Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 0.0e+00 1324.3 681 100.0
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 0.0e+00 1191.0 688 89.8
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.3e-299 1032.7 692 79.5
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 1.9e-271 939.1 691 73.7
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 3.1e-266 921.8 690 73.5
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 3.6e-238 828.6 628 74.0
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 1.5e-231 806.6 693 67.8
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 9.8e-220 767.3 694 66.1
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 1.5e-215 753.4 695 65.5
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 4.9e-203 711.8 693 62.9
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 8.4e-203 711.1 694 62.8
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 8.4e-203 711.1 693 62.8
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 2.1e-201 706.4 694 62.5
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 2.1e-201 706.4 694 62.5
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 2.3e-200 703.0 695 62.4
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 4.8e-198 695.3 677 63.1
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 8.1e-198 694.5 691 58.5
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 6.9e-189 664.8 694 60.4
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 3.5e-116 423.3 708 44.4
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.4e-64 251.9 740 32.2
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 1.8e-64 251.5 637 34.7
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.6e-63 247.7 589 36.7
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 4.5e-63 246.9 712 32.9
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 5.8e-63 246.5 725 33.8
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 4.6e-60 236.9 635 35.1
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 8.7e-59 232.6 629 34.5
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 1.9e-58 231.5 720 32.2
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 4.8e-57 226.9 664 32.8
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 8.2e-57 226.1 578 34.9
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 1.4e-56 225.3 577 35.7
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.8e-56 224.9 668 32.6
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 2.4e-56 224.6 664 32.8
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.2e-55 222.2 638 33.9
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 2.6e-55 221.1 661 30.4
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.4e-55 220.7 621 33.0
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 2.2e-54 218.0 631 33.9
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 2.9e-54 217.6 718 32.0
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 3.8e-54 217.2 593 34.9
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 2.5e-53 214.5 630 33.8
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 2.1e-52 211.5 627 34.1
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 2.3e-51 208.0 540 33.1
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.3e-51 208.0 581 33.4
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 3.0e-51 207.6 587 34.6
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.1e-51 206.8 604 31.6
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 7.4e-50 203.0 638 29.9
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 7.4e-50 203.0 748 29.8
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.3e-49 202.2 619 32.0
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 1.3e-49 202.2 700 30.3
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 2.4e-48 198.0 631 31.7
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 4.1e-48 197.2 701 31.1
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 2.0e-47 194.9 383 38.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 3.4e-47 194.1 556 33.5
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.0e-46 192.6 556 32.4
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 2.2e-46 191.4 557 33.2
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.2e-46 191.4 548 33.4
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 2.2e-46 191.4 580 31.9
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 2.9e-46 191.0 680 29.6
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.0e-46 190.3 584 32.0
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.1e-45 189.1 795 29.7
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 1.1e-45 189.1 562 33.1
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.9e-45 188.3 619 31.3
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 3.2e-45 187.6 578 34.3
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 5.5e-45 186.8 543 32.4
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.2e-44 185.7 603 31.5
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.7e-44 184.5 702 28.5
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 3.6e-44 184.1 635 29.0
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 1.8e-43 181.8 609 31.5
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 3.0e-43 181.0 554 30.5
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 5.1e-43 180.3 595 31.6
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 8.8e-43 179.5 590 32.2
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 1.3e-41 175.6 704 30.1
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 6.3e-41 173.3 537 32.0
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 8.2e-41 172.9 812 29.3
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 8.2e-41 172.9 708 29.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 8.2e-41 172.9 699 28.8
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 2.6e-39 167.9 578 29.2
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 2.6e-39 167.9 615 31.2
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.9e-39 166.8 571 29.9
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 5.9e-39 166.8 576 30.2
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 7.7e-39 166.4 639 29.3
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.3e-38 165.6 292 40.8
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.3e-38 165.6 520 32.3
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 1.7e-38 165.2 479 34.7
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.2e-38 164.9 356 35.7
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 6.5e-38 163.3 559 32.2
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 8.5e-38 162.9 531 30.7
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.1e-37 162.5 570 30.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.4e-37 162.2 740 26.1
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.2e-36 159.1 619 28.3
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 1.6e-36 158.7 665 29.9
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.7e-36 157.9 454 31.7
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 4.7e-36 157.1 599 31.6
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.9e-35 154.1 563 29.7
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.1e-34 152.5 504 31.7
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 2.0e-34 151.8 587 29.5
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 4.4e-34 150.6 610 29.5
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.7e-34 150.2 511 31.5
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 9.7e-34 149.4 548 31.6
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 1.3e-33 149.1 528 29.7
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.7e-33 148.7 677 26.0
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 2.2e-33 148.3 592 30.1
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 1.4e-32 145.6 618 30.6
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.6e-31 141.4 340 35.9
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 7.2e-29 133.3 579 29.5
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 2.1e-28 131.7 570 28.6
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.1e-28 131.7 331 34.4
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 8.0e-28 129.8 545 29.9
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.0e-27 129.4 547 29.3
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 4.8e-25 120.6 601 27.6
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 4.1e-24 117.5 313 33.9
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.6e-23 115.5 304 35.9
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 8.5e-22 109.8 385 30.9
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.5e-21 109.0 348 30.7
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 4.2e-21 107.5 297 32.3
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.2e-18 99.4 282 33.7
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.5e-18 99.0 615 27.5
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.1e-16 92.8 189 39.7
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 4.5e-15 87.4 435 30.3
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 7.2e-13 80.1 152 35.5
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.2e-10 72.8 272 28.7
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 4.1e-08 64.3 259 30.9
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 5.4e-08 63.9 371 25.6
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 1.6e-07 62.4 71 49.3
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 3.5e-07 61.2 259 29.7
BolC2t10428H Brassica oleracea HOM05D005926 ORTHO05D007001 3.8e-06 57.8 49 59.2


User provided reference genes

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