Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 7.9e-100 367.5 182 100.0
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 8.8e-99 364.0 182 98.9
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 1.7e-94 349.7 182 94.0
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 1.9e-93 346.3 182 94.0
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.4e-91 340.1 182 91.8
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 5.2e-91 338.2 182 92.3
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.5e-85 318.2 182 86.3
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.5e-85 318.2 182 86.3
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 3.6e-84 315.5 183 85.2
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 3.6e-84 315.5 183 85.2
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 1.1e-77 293.9 220 71.4
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.6e-68 263.5 181 72.9
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 8.0e-68 261.2 186 70.4
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.0e-67 258.8 182 69.2
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 5.2e-67 258.5 182 69.2
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 5.2e-67 258.5 182 68.7
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 5.2e-67 258.5 182 68.7
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 6.8e-67 258.1 151 82.1
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 9.8e-66 254.2 183 70.5
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.2e-65 253.1 183 70.5
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 6.3e-65 251.5 181 68.5
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 3.1e-64 249.2 181 68.5
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 4.1e-64 248.8 165 73.9
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 7.0e-64 248.1 182 67.0
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 2.7e-63 246.1 183 69.9
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 3.5e-63 245.7 151 76.8
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 4.5e-63 245.4 184 66.3
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.5e-63 245.4 160 74.4
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.3e-62 243.0 183 67.2
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 3.8e-62 242.3 173 68.8
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 3.8e-62 242.3 178 68.5
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 5.0e-62 241.9 145 78.6
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 5.0e-62 241.9 157 73.9
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 5.0e-62 241.9 157 73.9
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.1e-61 240.7 142 78.2
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.1e-61 240.7 182 63.7
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.1e-61 240.7 150 77.3
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.5e-61 240.4 172 68.0
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.5e-61 240.4 178 66.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.9e-61 240.0 178 67.4
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 1.9e-61 240.0 151 74.8
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 3.3e-61 239.2 153 73.9
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 5.6e-61 238.4 165 70.9
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 5.6e-61 238.4 158 72.2
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 5.6e-61 238.4 158 72.2
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 5.6e-61 238.4 182 64.8
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 5.6e-61 238.4 187 64.7
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 9.5e-61 237.7 174 66.7
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 9.5e-61 237.7 144 75.7
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.2e-60 237.3 146 77.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.2e-60 237.3 141 78.7
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.6e-60 236.9 144 76.4
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 2.1e-60 236.5 177 65.5
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 2.1e-60 236.5 182 65.9
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 2.8e-60 236.1 187 64.2
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 6.1e-60 235.0 148 75.7
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 6.1e-60 235.0 192 61.5
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 8.0e-60 234.6 144 74.3
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 8.0e-60 234.6 185 63.2
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.4e-59 233.8 151 75.5
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 1.4e-59 233.8 145 75.9
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 2.3e-59 233.0 170 67.1
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 4.0e-59 232.3 149 76.5
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 5.2e-59 231.9 176 67.6
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 5.2e-59 231.9 184 63.0
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 6.8e-59 231.5 151 73.5
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 8.9e-59 231.1 185 63.2
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 1.2e-58 230.7 176 68.2
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 1.2e-58 230.7 151 72.2
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 2.6e-58 229.6 189 67.7
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.4e-58 228.8 175 65.7
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 7.5e-58 228.0 149 75.2
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 9.8e-58 227.6 155 73.5
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 4.9e-57 225.3 152 71.7
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 8.3e-57 224.6 134 79.1
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 2.4e-56 223.0 216 55.1
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 4.1e-56 222.2 151 70.9
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 7.0e-56 221.5 171 66.7
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 2.0e-55 219.9 170 63.5
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.5e-55 219.2 130 80.8
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.3e-54 217.2 144 73.6
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 5.0e-54 215.3 159 68.6
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 8.6e-54 214.5 132 77.3
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.1e-53 214.2 181 61.3
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.5e-53 213.8 184 60.9
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 1.5e-53 213.8 172 62.8
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 4.3e-53 212.2 138 72.5
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 4.3e-53 212.2 181 60.2
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 4.0e-51 205.7 136 72.1
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 3.4e-50 202.6 184 57.6
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 5.2e-43 178.7 163 59.5
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 1.7e-41 173.7 171 55.0
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 6.4e-41 171.8 183 50.3
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 4.1e-40 169.1 168 57.1
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 5.1e-38 162.2 91 81.3
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 5.1e-38 162.2 184 46.7
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 8.1e-36 154.8 101 75.2
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 8.9e-35 151.4 139 60.4
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 3.4e-34 149.4 144 57.6
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 9.9e-34 147.9 178 48.3
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.0e-26 123.6 147 47.6
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.6e-26 123.2 131 51.1
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 2.2e-25 120.2 121 57.9
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 2.2e-25 120.2 121 57.9
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 9.3e-24 114.8 118 63.6
BraA04t16410Z Brassica rapa HOM05D006601 ORTHO05D008281 6.0e-23 112.1 118 61.0
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 3.4e-18 96.3 102 53.9
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 9.9e-18 94.7 80 63.8
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.7e-17 94.0 124 44.4
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.1e-16 91.3 106 52.8
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 9.3e-16 88.2 102 52.0
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 4.8e-12 75.9 55 67.3
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 2.9e-09 66.6 37 86.5
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 2.5e-08 63.5 87 43.7
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 5.5e-08 62.4 31 77.4
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 4.6e-07 59.3 31 74.2


User provided reference genes

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