Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 2.2e-277 958.4 500 100.0
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 1.1e-220 770.0 517 81.0
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 1.5e-188 663.3 511 74.8
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.1e-178 630.6 521 68.1
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.6e-171 606.7 519 69.0
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 4.5e-161 572.0 513 65.9
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 3.5e-142 509.2 516 61.2
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 8.2e-139 498.0 511 60.7
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 3.8e-136 489.2 507 59.6
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.1e-135 487.6 510 59.8
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.1e-135 487.6 510 59.8
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 7.4e-124 448.4 509 58.0
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 9.7e-124 448.0 510 58.2
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 2.6e-116 423.3 516 52.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 3.6e-86 323.2 556 44.1
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 3.3e-47 193.7 522 30.3
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 7.6e-44 182.6 534 33.9
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 9.9e-44 182.2 520 32.5
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.9e-43 179.9 526 31.4
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.4e-42 177.6 506 33.8
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 3.2e-42 177.2 525 31.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 3.2e-42 177.2 521 32.4
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 9.3e-42 175.6 566 31.1
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.6e-41 174.9 511 32.1
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.6e-41 174.9 548 31.0
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.6e-41 174.9 511 32.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 2.1e-41 174.5 546 30.8
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.7e-41 174.1 510 32.7
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.6e-41 173.3 506 33.6
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 7.9e-41 172.6 521 31.9
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.3e-40 171.0 515 32.8
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 3.0e-40 170.6 545 30.8
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 5.1e-40 169.9 554 31.0
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 6.7e-40 169.5 513 32.9
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 6.7e-40 169.5 549 30.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 6.7e-40 169.5 554 29.6
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 8.7e-40 169.1 514 32.9
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.1e-39 168.7 526 29.8
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.9e-39 167.9 520 32.9
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.9e-39 167.9 513 31.0
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.9e-39 167.9 504 31.9
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 1.9e-39 167.9 505 30.1
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 4.3e-39 166.8 507 31.8
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 7.4e-39 166.0 372 41.1
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 1.6e-38 164.9 514 32.7
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 2.1e-38 164.5 507 31.4
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 2.1e-38 164.5 522 28.9
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.1e-38 164.5 522 28.9
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 2.1e-38 164.5 561 30.5
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 3.7e-38 163.7 538 32.3
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 3.7e-38 163.7 504 31.9
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 4.8e-38 163.3 512 30.1
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 6.2e-38 162.9 550 30.4
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.1e-37 162.2 513 30.4
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 1.1e-37 162.2 531 31.1
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 3.1e-37 160.6 517 33.3
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 3.1e-37 160.6 506 33.0
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.0e-36 157.9 512 30.5
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.6e-36 157.5 509 31.4
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 3.4e-36 157.1 522 32.0
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 7.6e-36 156.0 508 29.3
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.7e-35 154.8 511 29.2
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.1e-34 152.1 530 29.8
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.4e-34 151.8 504 30.0
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 5.5e-34 149.8 543 29.8
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 7.1e-34 149.4 516 28.3
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 4.6e-33 146.7 521 31.3
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 6.0e-33 146.4 518 30.9
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.0e-32 145.6 524 29.8
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.0e-32 145.6 526 31.7
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 3.0e-32 144.1 496 29.6
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 3.9e-32 143.7 554 27.3
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.7e-32 142.9 536 31.3
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 8.7e-32 142.5 520 28.8
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.5e-31 141.7 509 31.2
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 1.9e-31 141.4 546 29.1
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 2.5e-31 141.0 518 28.6
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 3.3e-31 140.6 511 28.4
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 9.6e-31 139.0 146 55.5
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.3e-30 138.7 516 31.8
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 1.6e-30 138.3 545 29.4
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 1.6e-30 138.3 503 31.2
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.6e-30 138.3 506 30.2
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.1e-29 135.6 537 28.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 2.4e-29 134.4 126 57.9
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.1e-29 134.0 517 30.2
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 5.3e-29 133.3 555 28.3
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 6.9e-29 132.9 524 29.8
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 1.2e-28 132.1 617 27.1
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.5e-28 131.7 558 28.3
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 2.0e-28 131.3 570 28.8
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 3.4e-28 130.6 198 43.9
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.1e-26 125.6 544 28.1
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 2.5e-26 124.4 546 28.0
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 9.3e-26 122.5 294 37.4
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 4.6e-25 120.2 125 53.6
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 4.6e-25 120.2 533 26.8
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.1e-23 115.5 469 26.7
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.1e-23 115.5 152 44.7
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 5.7e-23 113.2 572 27.3
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 1.3e-22 112.1 116 56.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 3.7e-22 110.5 90 61.1
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 2.0e-20 104.8 509 26.7
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 3.8e-19 100.5 485 26.8
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 3.6e-17 94.0 464 25.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 2.3e-16 91.3 532 24.8
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.0e-16 90.9 175 36.0
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 3.9e-16 90.5 64 67.2
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.1e-15 89.0 50 82.0
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 2.0e-15 88.2 185 32.4
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 3.3e-15 87.4 59 71.2
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 3.7e-14 84.0 335 26.6
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 4.8e-14 83.6 83 48.2
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 8.2e-14 82.8 377 25.7
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 6.9e-13 79.7 475 25.5
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 2.9e-11 74.3 79 40.5
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 3.8e-11 73.9 89 41.6
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.5e-10 71.2 75 40.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 3.2e-10 70.9 73 45.2
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 4.2e-10 70.5 82 40.2
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 5.5e-10 70.1 70 44.3
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.2e-09 68.9 76 38.2
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 1.6e-09 68.6 478 23.6
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.6e-09 68.6 75 38.7
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 1.6e-09 68.6 71 45.1
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 2.1e-09 68.2 90 36.7
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 3.6e-09 67.4 87 36.8
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 4.7e-09 67.0 95 32.6
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 6.1e-09 66.6 75 37.3
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.0e-08 65.9 68 42.6
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.4e-08 65.5 61 42.6
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.8e-08 65.1 73 37.0
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 1.8e-08 65.1 56 48.2
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 2.3e-08 64.7 76 39.5
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 3.0e-08 64.3 59 47.5
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 3.9e-08 63.9 70 50.0
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 3.9e-08 63.9 124 33.9
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 3.9e-08 63.9 71 39.4
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 5.1e-08 63.5 58 46.6
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 5.1e-08 63.5 79 40.5
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 6.7e-08 63.2 207 27.5
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 8.8e-08 62.8 74 40.5
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 8.8e-08 62.8 58 43.1
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 8.8e-08 62.8 74 40.5
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 8.8e-08 62.8 75 40.0
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 1.1e-07 62.4 79 35.4
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.0e-07 61.6 50 50.0
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 2.0e-07 61.6 58 43.1
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 2.6e-07 61.2 54 42.6
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 2.6e-07 61.2 77 37.7
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.3e-07 60.8 71 36.6
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 4.4e-07 60.5 181 26.5
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 4.4e-07 60.5 81 37.0
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 4.4e-07 60.5 71 35.2
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 4.4e-07 60.5 205 28.8
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 5.7e-07 60.1 78 39.7
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 5.7e-07 60.1 75 37.3
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 7.4e-07 59.7 85 35.3
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 7.4e-07 59.7 57 40.4
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 7.4e-07 59.7 54 46.3
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 7.4e-07 59.7 67 41.8
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 7.4e-07 59.7 185 25.9
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 9.7e-07 59.3 50 50.0
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 9.7e-07 59.3 73 38.4
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.3e-06 58.9 81 34.6
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.3e-06 58.9 210 26.2
Solyc03g019840.4 Solanum lycopersicum HOM05D008057 ORTHO05D003476 1.3e-06 58.9 75 36.0
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 1.7e-06 58.5 66 34.8
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 2.2e-06 58.2 75 33.3
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 2.2e-06 58.2 62 40.3
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 2.2e-06 58.2 73 37.0
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.8e-06 57.8 306 24.8
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 2.8e-06 57.8 70 37.1
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 3.7e-06 57.4 66 33.3
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 6.3e-06 56.6 295 24.1
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 6.3e-06 56.6 55 36.4
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 8.2e-06 56.2 50 42.0
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 8.2e-06 56.2 65 40.0


User provided reference genes

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