Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 8.2e-189 663.7 363 100.0
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 6.3e-181 637.5 363 96.4
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 3.1e-172 608.6 366 92.1
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 3.2e-153 545.4 372 85.2
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.0e-142 509.6 366 78.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 6.6e-130 468.0 366 72.7
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.8e-127 459.9 375 72.8
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-127 459.9 375 72.8
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 5.2e-127 458.4 375 73.1
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.6e-126 456.1 374 71.7
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 4.4e-126 455.3 374 71.7
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 2.4e-124 449.5 375 70.4
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.2e-123 447.2 263 86.3
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.6e-115 420.2 374 67.9
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 7.8e-107 391.3 373 70.5
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.3e-106 390.6 378 70.1
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 6.6e-106 388.3 383 69.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.6e-106 388.3 376 65.7
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 7.3e-105 384.8 376 65.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.7e-85 320.5 390 51.3
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-79 301.2 336 53.0
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.1e-75 287.0 394 47.2
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.5e-73 280.8 380 48.4
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 2.2e-72 276.9 406 45.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 5.3e-71 272.3 396 44.9
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.3e-71 272.3 396 45.5
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.5e-65 254.2 402 43.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 4.3e-65 252.7 417 42.2
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.3e-64 251.1 402 45.0
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.7e-64 249.6 397 45.6
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 6.3e-64 248.8 403 41.7
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.4e-63 247.7 396 44.4
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.8e-63 247.3 417 41.7
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.5e-62 244.2 394 41.9
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 5.9e-62 242.3 405 40.5
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.3e-61 241.1 396 41.4
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.7e-61 240.7 406 43.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.9e-61 240.0 427 40.7
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.9e-61 240.0 402 42.0
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.2e-60 236.5 412 41.7
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 4.2e-60 236.1 432 40.3
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 5.5e-60 235.7 446 39.0
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 9.4e-60 235.0 410 39.8
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.2e-59 234.6 405 40.7
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.6e-59 234.2 409 40.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.1e-59 233.8 412 41.0
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.7e-59 233.4 411 41.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.7e-59 233.4 454 39.9
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.6e-59 233.0 430 39.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 4.7e-59 232.6 403 40.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.0e-58 229.9 445 37.8
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.0e-58 229.9 409 41.1
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 8.8e-58 228.4 433 38.3
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 8.8e-58 228.4 394 41.6
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.0e-57 227.3 403 42.4
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.6e-57 226.9 407 40.0
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 2.6e-57 226.9 403 40.0
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 3.3e-57 226.5 404 41.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.7e-57 225.7 431 38.3
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-56 224.6 402 39.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-56 224.6 402 39.6
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.8e-56 223.4 426 39.9
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.7e-56 223.0 412 39.3
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 8.2e-56 221.9 410 39.8
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-55 221.1 386 40.7
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.1e-55 219.9 351 43.3
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.1e-55 219.9 423 39.0
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.3e-55 219.2 414 41.3
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 7.0e-55 218.8 405 39.0
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.1e-55 218.4 431 38.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.1e-55 218.4 402 39.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.2e-54 218.0 398 40.5
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.0e-54 217.2 405 38.3
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.6e-54 216.9 395 39.7
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 3.5e-54 216.5 388 40.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 3.5e-54 216.5 351 43.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.5e-54 216.5 417 38.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.9e-54 215.7 416 37.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 5.9e-54 215.7 403 46.2
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.8e-53 213.0 327 42.8
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.8e-53 213.0 391 39.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 5.0e-53 212.6 418 41.9
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 6.5e-53 212.2 428 38.6
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 6.5e-53 212.2 392 39.5
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 8.5e-53 211.8 440 37.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.4e-52 211.1 360 42.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 3.2e-52 209.9 398 39.4
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 5.5e-52 209.1 409 36.9
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.2e-51 208.0 434 37.1
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.1e-51 207.2 414 38.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.7e-51 206.8 376 38.8
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.3e-50 203.8 388 46.1
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.0e-50 203.4 375 38.7
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 5.2e-50 202.6 400 36.8
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.1e-49 201.4 413 37.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 7.4e-49 198.7 380 40.3
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 9.7e-49 198.4 421 34.9
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.8e-48 196.1 361 41.8
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 8.2e-48 195.3 395 36.7
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.1e-47 194.9 417 37.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.1e-47 193.0 412 36.7
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.6e-46 190.3 406 36.5
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 3.5e-46 189.9 390 39.2
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.5e-46 189.5 395 35.9
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 1.1e-44 184.9 443 33.9
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.2e-44 183.3 365 37.5
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 4.2e-44 183.0 118 81.4
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.2e-44 183.0 443 34.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 5.2e-42 176.0 343 38.2
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.8e-42 175.3 264 43.6
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 2.6e-41 173.7 272 44.9
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 4.8e-40 169.5 387 33.1
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 9.1e-39 165.2 427 33.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.0e-37 159.5 290 41.4
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 8.5e-37 158.7 406 35.2
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 9.4e-36 155.2 396 33.1
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 2.3e-34 150.6 165 73.3
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.1e-28 131.7 428 30.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 7.2e-28 129.0 229 38.0
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.5e-28 128.6 271 36.9
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.8e-27 127.1 244 38.9
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 2.8e-27 127.1 434 30.6
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.6e-27 126.7 364 30.8
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 4.7e-27 126.3 248 35.5
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.4e-26 124.8 191 39.3
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.2e-26 122.9 253 34.8
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 6.8e-26 122.5 242 38.8
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.2e-25 121.7 196 41.3
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.5e-25 121.3 254 37.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.0e-25 120.9 244 37.3
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 2.6e-25 120.6 240 35.8
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 3.4e-25 120.2 217 39.2
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 5.7e-25 119.4 241 38.2
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.3e-24 118.2 256 35.5
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.2e-24 117.5 266 35.7
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.7e-24 116.7 275 36.4
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.3e-24 115.9 215 39.1
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.4e-23 114.0 259 37.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.1e-23 113.6 361 32.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 7.0e-23 112.5 192 39.6
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 7.0e-23 112.5 207 37.2
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 9.2e-23 112.1 196 36.2
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.0e-22 110.9 396 28.8
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 5.9e-22 109.4 245 35.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 7.8e-22 109.0 254 33.1
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 7.8e-22 109.0 432 28.2
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 7.8e-22 109.0 240 33.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.3e-21 108.2 226 34.5
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 2.3e-21 107.5 256 34.0
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.9e-21 107.1 249 35.3
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.1e-20 105.1 212 37.3
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-20 104.8 224 33.5
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.5e-20 104.0 234 32.5
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.5e-20 104.0 260 34.2
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 7.3e-20 102.4 254 32.3
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 2.1e-19 100.9 262 35.5
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 9.8e-17 92.0 204 32.4
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.4e-15 86.3 259 27.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.2e-14 85.1 132 40.9
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.0e-14 84.3 93 46.2
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.0e-14 84.3 132 40.9
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.0e-14 84.3 132 40.9
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.6e-12 76.3 110 42.7
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.3e-12 75.9 181 33.7
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.2e-11 75.1 237 31.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.2e-09 68.6 222 30.6
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 3.4e-09 67.0 51 56.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 5.8e-09 66.2 49 59.2
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.9e-07 61.2 177 32.8


User provided reference genes

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