Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52070 Arabidopsis thaliana HOM05D007963 ORTHO05D009967 2.3e-57 225.3 114 100.0
AL5G32620 Arabidopsis lyrata HOM05D007963 ORTHO05D009967 3.5e-53 211.5 113 95.6
Thhalv10010836m.g Eutrema salsugineum HOM05D007963 ORTHO05D009967 9.8e-40 166.8 115 76.5
CARHR161770 Cardamine hirsuta HOM05D007963 ORTHO05D009967 1.7e-39 166.0 115 78.3
Carub.0005s1839 Capsella rubella HOM05D007963 ORTHO05D009967 2.4e-38 162.2 121 76.0
A09p45130 Brassica napus HOM05D007963 ORTHO05D009967 7.8e-37 157.1 115 73.0
BraA09t39974Z Brassica rapa HOM05D007963 ORTHO05D009967 7.8e-37 157.1 115 73.0
BcaC02g09285 Brassica carinata HOM05D007963 ORTHO05D009967 1.3e-36 156.4 113 72.6
BcaB01g00449 Brassica carinata HOM05D007963 ORTHO05D009967 1.7e-36 156.0 112 72.3
C08p27320 Brassica napus HOM05D007963 ORTHO05D009967 1.7e-36 156.0 112 72.3
BolC8t50349H Brassica oleracea HOM05D007963 ORTHO05D009967 3.9e-36 154.8 112 72.3
BcaNung06964 Brassica carinata HOM05D007963 ORTHO05D009967 6.6e-36 154.1 115 71.3
A04p07310 Brassica napus HOM05D007963 ORTHO05D009967 1.9e-35 152.5 113 71.7
BraA04t16426Z Brassica rapa HOM05D007963 ORTHO05D009967 1.9e-35 152.5 113 71.7
BcaB02g08592 Brassica carinata HOM05D007963 ORTHO05D009967 8.9e-33 143.7 112 68.8
C04p40920 Brassica napus HOM05D007963 ORTHO05D009967 1.9e-30 136.0 99 73.7
BcaNung06087 Brassica carinata HOM05D007963 ORTHO05D009967 1.1e-25 120.2 112 60.7
Aa31LG10G7140 Aethionema arabicum HOM05D007963 ORTHO05D009967 8.9e-25 117.1 122 52.5
Atru.chr11.2601 Acer truncatum HOM05D007963 ORTHO05D009967 2.5e-11 72.4 119 40.3
FvH4_5g32100 Fragaria vesca HOM05D007963 ORTHO05D009967 7.4e-11 70.9 90 52.2
Ciclev10033085m.g Citrus clementina HOM05D007963 ORTHO05D009967 2.8e-10 68.9 83 50.6
Duzib133G0999 Durio zibethinus HOM05D007963 ORTHO05D009967 4.8e-10 68.2 124 40.3
MD02G1308200 Malus domestica HOM05D007963 ORTHO05D009967 4.8e-10 68.2 91 48.4
RcHm_v2.0_Chr7g0228141 Rosa chinensis HOM05D007963 ORTHO05D009967 4.8e-10 68.2 90 50.0
VMungo1127G0040 Vigna mungo HOM05D007963 ORTHO05D009967 6.2e-10 67.8 96 42.7
Glyma.12G008400 Glycine max HOM05D007963 ORTHO05D009967 8.1e-10 67.4 112 43.8
Haze_03176 Corylus avellana HOM05D007963 ORTHO05D009967 1.8e-09 66.2 122 44.3
MSTRG.20574 Avicennia marina HOM05D007963 ORTHO05D009967 2.4e-09 65.9 117 41.9
Lalb_Chr20g0107921 Lupinus albus HOM05D007963 ORTHO05D009967 2.4e-09 65.9 114 43.9
Cfa010795 Carpinus fangiana HOM05D007963 ORTHO05D009967 3.1e-09 65.5 123 39.0
TWI09G0461 Tripterygium wilfordii HOM05D007963 ORTHO05D009967 3.1e-09 65.5 117 42.7
PGSC0003DMG400023738 Solanum tuberosum HOM05D007963 ORTHO05D009967 4.0e-09 65.1 85 47.1
unitig_61.g26362 Utricularia gibba HOM05D007963 ORTHO05D009967 4.0e-09 65.1 84 51.2
COL.COLO4_04871 Corchorus olitorius HOM05D007963 ORTHO05D009967 5.3e-09 64.7 50 62.0
DCAR_003219 Daucus carota HOM05D007963 ORTHO05D009967 6.9e-09 64.3 52 63.5
MBI04_g34432_MAGBIO Magnolia biondii HOM05D007963 ORTHO05D009967 6.9e-09 64.3 52 63.5
Prupe.2G017200 Prunus persica HOM05D007963 ORTHO05D009967 6.9e-09 64.3 82 47.6
TAR369G0233 Trochodendron aralioides HOM05D007963 ORTHO05D009967 6.9e-09 64.3 114 40.4
Phvul.011G012801 Phaseolus vulgaris HOM05D007963 ORTHO05D009967 9.0e-09 63.9 51 62.7
Sopen10g031160 Solanum pennellii HOM05D007963 ORTHO05D009967 1.2e-08 63.5 84 46.4
CiPaw.13G006800 Carya illinoinensis HOM05D007963 ORTHO05D009967 2.6e-08 62.4 121 38.0
Potri.009G059100 Populus trichocarpa HOM05D007963 ORTHO05D009967 3.4e-08 62.0 117 35.9
Hma1.2p1_2160F.1_g315600 Hydrangea macrophylla HOM05D007963 ORTHO05D009967 5.8e-08 61.2 72 51.4
QL04p008099 Quercus lobata HOM05D007963 ORTHO05D009967 5.8e-08 61.2 118 38.1
QL04p008549 Quercus lobata HOM05D007963 ORTHO05D009967 5.8e-08 61.2 118 38.1
SalBow5G1437 Salvia bowleyana HOM05D007963 ORTHO05D009967 5.8e-08 61.2 122 39.3
SalBow5G4167 Salvia bowleyana HOM05D007963 ORTHO05D009967 5.8e-08 61.2 122 39.3
CiPaw.14G001400 Carya illinoinensis HOM05D007963 ORTHO05D009967 7.6e-08 60.8 113 38.1
vmacro13678 Vaccinium macrocarpon HOM05D007963 ORTHO05D009967 7.6e-08 60.8 114 39.5
CSS0005909 Camellia sinensis var. sinensis HOM05D007963 ORTHO05D009967 1.3e-07 60.1 57 54.4
Cpa.g.sc125.16 Carica papaya HOM05D007963 ORTHO05D009967 1.3e-07 60.1 75 52.0
Sed0005364 Sechium edule HOM05D007963 ORTHO05D009967 1.3e-07 60.1 97 42.3
AUR62009397 Chenopodium quinoa HOM05D007963 ORTHO05D009967 1.7e-07 59.7 54 55.6
HanXRQChr01g0016481 Helianthus annuus HOM05D007963 ORTHO05D009967 1.7e-07 59.7 48 60.4
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.2e-07 59.3 101 34.7
MELO3C023985.2 Cucumis melo HOM05D007963 ORTHO05D009967 2.9e-07 58.9 74 45.9
Eucgr.J01210 Eucalyptus grandis HOM05D007963 ORTHO05D009967 2.9e-07 58.9 75 50.7
Rhsim07G0056600 Rhododendron simsii HOM05D007963 ORTHO05D009967 2.9e-07 58.9 87 40.2
CsaV3_3G032070 Cucumis sativus L. HOM05D007963 ORTHO05D009967 4.9e-07 58.2 73 43.8
ClCG10G012280 Citrullus lanatus HOM05D007963 ORTHO05D009967 6.4e-07 57.8 74 52.7
Gohir.A08G143400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 6.4e-07 57.8 55 54.5
Gohir.D08G164400 Gossypium hirsutum HOM05D007963 ORTHO05D009967 6.4e-07 57.8 55 54.5
Gorai.004G171400 Gossypium raimondii HOM05D007963 ORTHO05D009967 6.4e-07 57.8 55 54.5
Lsat_1_v5_gn_1_105740 Lactuca sativa HOM05D007963 ORTHO05D009967 8.4e-07 57.4 57 50.9
Medtr4g039540 Medicago truncatula HOM05D007963 ORTHO05D009967 1.4e-06 56.6 39 74.4
Thecc.01G408600 Theobroma cacao HOM05D007963 ORTHO05D009967 1.9e-06 56.2 121 34.7
Sed0018324 Sechium edule HOM05D007963 ORTHO05D009967 2.4e-06 55.8 97 40.2
Sc23g0005920 Simmondsia chinensis HOM05D007963 ORTHO05D009967 2.4e-06 55.8 47 59.6
Lj3g0025556 Lotus japonicus HOM05D007963 ORTHO05D009967 3.2e-06 55.5 110 39.1
Manes.07G007300 Manihot esculenta HOM05D007963 ORTHO05D009967 3.2e-06 55.5 115 39.1
SGA_v2.0_scaffold4G02518 Striga asiatica HOM05D007963 ORTHO05D009967 3.2e-06 55.5 94 45.7
Nn2g15279 Nelumbo nucifera HOM05D007963 ORTHO05D009967 9.3e-06 53.9 114 36.0
SEGI_13442 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 9.3e-06 53.9 39 61.5
SEGI_37070 Sequoiadendron giganteum HOM05D007963 ORTHO05D009967 9.3e-06 53.9 39 61.5


User provided reference genes

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