Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 0.0e+00 1617.8 843 100.0
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 0.0e+00 1564.7 843 96.3
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 0.0e+00 1422.9 827 91.2
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 0.0e+00 1163.7 825 77.9
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 0.0e+00 1141.3 825 77.1
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 0.0e+00 1140.9 825 76.8
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 0.0e+00 1137.1 825 77.1
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 0.0e+00 1135.9 845 76.1
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1126.7 814 77.0
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1125.2 814 77.1
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1100.5 843 74.4
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 0.0e+00 1091.6 864 73.5
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 4.4e-310 1067.8 864 72.3
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 5.7e-310 1067.4 867 72.4
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.8e-308 1062.4 853 70.2
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 9.1e-300 1033.5 739 78.8
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 4.5e-299 1031.2 854 68.6
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.6e-296 1022.7 838 69.9
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 3.0e-295 1018.5 858 67.9
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 1.4e-292 1009.6 826 69.6
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 9.1e-292 1006.9 807 70.5
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 6.1e-288 994.2 838 68.0
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 1.8e-226 790.0 898 54.9
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 5.1e-226 788.5 902 55.0
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.3e-225 785.8 884 55.9
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.3e-224 783.9 900 54.9
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 2.1e-224 783.1 899 54.4
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 9.0e-223 777.7 868 56.7
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 1.6e-219 766.9 902 54.4
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 6.0e-219 765.0 899 52.6
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 1.0e-218 764.2 889 55.5
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 9.7e-217 757.7 897 52.5
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 1.6e-216 756.9 871 55.0
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.2e-216 756.5 897 52.5
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.8e-216 756.1 877 54.6
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 8.2e-216 754.6 896 54.0
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 2.4e-215 753.1 901 52.8
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 4.2e-212 742.3 855 54.6
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 4.6e-211 738.8 788 57.6
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.1e-209 734.2 879 53.6
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 1.5e-209 733.8 900 50.6
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 2.5e-209 733.0 877 53.4
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.3e-209 732.3 903 51.2
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.3e-208 730.7 903 51.2
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 4.8e-208 728.8 900 51.8
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 6.3e-208 728.4 864 53.8
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.1e-207 726.1 900 51.7
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 5.3e-207 725.3 857 53.4
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.2e-205 719.9 896 52.6
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 3.8e-205 719.2 875 52.7
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.2e-203 714.1 896 52.2
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 4.4e-201 705.7 908 49.4
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 3.7e-200 702.6 899 49.5
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 8.2e-200 701.4 904 49.9
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.1e-199 701.0 877 50.9
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 7.0e-199 698.4 879 50.5
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.6e-198 696.4 905 50.4
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.0e-197 694.5 905 50.4
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-196 691.0 897 49.8
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.9e-196 690.3 900 49.3
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.2e-196 688.3 882 50.1
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 7.2e-196 688.3 855 53.3
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.7e-195 686.4 906 49.6
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.6e-195 686.0 882 50.0
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 1.4e-194 684.1 773 54.5
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 6.7e-194 681.8 854 53.3
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.7e-193 678.7 856 52.9
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 1.3e-192 677.6 891 50.1
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.2e-192 676.8 854 52.9
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.8e-192 676.4 858 50.9
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 1.4e-191 674.1 838 51.7
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 9.1e-191 671.4 891 50.7
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 3.5e-190 669.5 901 49.7
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 3.5e-190 669.5 909 49.3
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 4.5e-190 669.1 897 49.9
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.0e-189 667.9 889 50.1
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 3.8e-189 666.0 912 48.9
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 6.5e-189 665.2 912 48.9
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.5e-188 664.1 874 48.9
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 5.5e-188 662.1 900 50.1
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.2e-187 661.0 899 50.2
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 8.0e-187 658.3 905 49.1
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.8e-186 657.1 896 49.1
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 4.0e-186 656.0 894 49.6
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 6.7e-186 655.2 876 48.9
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 1.2e-185 654.4 904 49.0
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.5e-185 654.1 846 50.0
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 4.4e-185 652.5 843 50.8
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 3.7e-184 649.4 883 49.2
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 3.7e-184 649.4 880 49.8
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 4.8e-184 649.0 891 48.9
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.1e-183 647.9 908 49.0
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 1.4e-183 647.5 893 49.0
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.4e-183 647.5 842 51.0
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 3.1e-183 646.4 889 49.9
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.5e-180 637.5 859 50.8
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 2.5e-180 636.7 887 47.6
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 4.2e-180 636.0 895 49.3
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 5.5e-180 635.6 901 48.4
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 7.2e-180 635.2 894 49.0
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 1.2e-179 634.4 855 49.9
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 6.1e-179 632.1 881 49.5
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.0e-178 631.3 793 52.7
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.8e-178 630.6 883 48.6
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 4.0e-178 629.4 793 52.6
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 8.8e-178 628.2 910 47.0
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 9.8e-177 624.8 896 48.8
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 9.1e-175 618.2 898 47.9
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 9.1e-175 618.2 894 48.3
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.6e-174 617.5 851 49.6
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 6.6e-173 612.1 898 48.2
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 4.7e-171 605.9 908 46.4
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 8.9e-170 601.7 396 84.1
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.5e-169 600.9 874 49.5
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.8e-168 596.7 891 47.8
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 4.9e-168 595.9 880 48.4
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 1.8e-167 594.0 869 48.7
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 3.8e-165 586.3 903 44.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 3.3e-164 583.2 845 49.2
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 9.5e-164 581.6 858 48.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.1e-163 580.5 878 46.6
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.0e-162 576.2 899 46.3
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 5.2e-162 575.9 899 46.8
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.9e-160 570.1 897 45.0
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 3.2e-159 566.6 838 45.2
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 5.4e-159 565.8 732 50.8
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 6.6e-157 558.9 876 45.4
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.9e-156 557.4 864 46.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 6.8e-154 548.9 844 46.9
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.2e-151 540.0 736 50.1
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.7e-150 537.0 876 45.0
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 3.9e-149 533.1 876 44.6
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 4.3e-148 529.6 840 45.6
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.1e-143 515.0 823 46.1
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 3.3e-140 503.4 843 42.6
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 8.9e-138 495.4 899 41.7
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 8.9e-138 495.4 904 42.8
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 4.4e-137 493.0 903 42.5
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 6.0e-134 482.6 922 41.4
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.8e-131 473.8 777 45.9
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 2.3e-125 454.1 705 46.8
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.3e-124 450.3 808 43.2
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 8.1e-123 445.7 711 42.5
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.7e-118 430.6 775 41.9
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 4.3e-116 423.3 702 45.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.8e-115 420.6 739 44.2
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.1e-107 394.4 298 71.5
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 2.8e-107 394.0 719 42.7
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.4e-106 391.0 783 38.1
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 6.9e-106 389.4 760 41.2
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 2.9e-104 384.0 875 39.3
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 6.1e-102 376.3 805 40.5
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 6.1e-102 376.3 879 38.5
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 7.9e-102 375.9 906 38.2
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 1.6e-99 368.2 456 48.9
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 4.5e-97 360.1 805 37.8
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 7.7e-97 359.4 899 37.2
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 2.4e-90 337.8 741 38.1
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.5e-89 333.6 786 38.3
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 7.7e-89 332.8 781 38.2
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 2.9e-88 330.9 883 36.4
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.2e-87 327.4 753 37.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 6.1e-78 296.6 861 34.7
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.4e-66 258.1 812 33.4
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.5e-63 246.9 845 31.7
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 3.6e-62 244.2 379 44.6
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.5e-60 236.5 415 43.1
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.1e-58 230.7 296 47.6
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.6e-57 228.8 357 42.0
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.0e-57 228.4 642 37.2
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.5e-55 220.3 297 47.8
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 1.4e-53 215.7 370 40.8
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 5.6e-47 193.7 469 36.9
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 7.3e-47 193.4 253 45.1
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.2e-42 177.9 177 52.0
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 3.9e-40 171.0 356 37.4
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 6.6e-40 170.2 97 87.6
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.3e-37 161.8 109 74.3
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 5.2e-37 160.6 701 29.4
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 1.6e-30 139.0 309 35.0
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 6.2e-30 137.1 263 48.7
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.3e-27 129.4 282 35.8
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.6e-09 69.3 241 28.6


User provided reference genes

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