Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 2.2e-131 472.2 231 100.0
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.3e-127 458.4 231 96.5
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 2.2e-123 445.7 228 95.2
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 2.5e-122 442.2 228 95.2
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 5.1e-120 434.5 228 94.3
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 4.1e-117 424.9 228 90.4
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 3.2e-114 415.2 228 91.2
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 4.2e-114 414.8 228 91.2
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 7.2e-114 414.1 231 90.9
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 7.2e-114 414.1 231 90.9
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 1.2e-113 413.3 228 90.8
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 1.2e-105 386.7 228 84.6
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 4.8e-102 374.8 213 84.0
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 3.0e-96 355.5 210 79.0
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 8.8e-96 354.0 205 80.5
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.2e-95 353.6 178 96.6
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.6e-95 352.4 205 80.0
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 4.4e-95 351.7 205 80.0
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 3.7e-94 348.6 210 76.7
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 1.2e-92 343.6 205 77.6
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 2.0e-92 342.8 208 79.3
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 4.5e-92 341.7 200 78.0
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 7.7e-92 340.9 199 79.9
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 7.7e-92 340.9 211 76.3
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 1.3e-91 340.1 205 78.5
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 1.7e-91 339.7 208 76.0
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 3.8e-91 338.6 200 79.5
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 8.5e-91 337.4 208 75.5
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 8.5e-91 337.4 204 78.9
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 1.1e-90 337.0 200 77.5
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 1.5e-90 336.7 203 76.4
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 1.5e-90 336.7 221 73.8
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 7.2e-90 334.3 200 78.5
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 7.2e-90 334.3 205 75.1
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 9.4e-90 334.0 200 78.0
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 9.4e-90 334.0 203 79.3
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 1.2e-89 333.6 199 78.4
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 1.6e-89 333.2 200 77.5
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 2.7e-89 332.4 200 77.5
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 2.7e-89 332.4 203 76.4
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 4.7e-89 331.6 203 76.8
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 1.4e-88 330.1 213 74.2
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 1.4e-88 330.1 198 77.3
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 1.4e-88 330.1 224 71.4
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 1.8e-88 329.7 213 73.7
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.0e-88 328.9 200 77.0
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 4.0e-88 328.6 200 75.5
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 8.8e-88 327.4 200 76.5
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 1.2e-87 327.0 208 74.5
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 1.5e-87 326.6 216 73.1
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 2.6e-87 325.9 213 73.2
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 2.6e-87 325.9 211 73.0
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 3.4e-87 325.5 200 76.5
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.4e-87 325.5 203 75.9
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 3.4e-87 325.5 209 72.7
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 4.4e-87 325.1 200 75.0
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 5.7e-87 324.7 204 73.5
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 9.8e-87 323.9 203 75.9
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 9.8e-87 323.9 199 75.9
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 2.8e-86 322.4 187 79.7
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 2.8e-86 322.4 218 69.7
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 2.8e-86 322.4 209 74.2
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 6.3e-86 321.2 216 72.7
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 6.3e-86 321.2 206 73.8
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 6.3e-86 321.2 203 72.9
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 1.1e-85 320.5 199 72.4
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 1.1e-85 320.5 200 74.0
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 1.4e-85 320.1 217 69.6
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.8e-85 319.7 203 74.9
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 2.4e-85 319.3 200 73.0
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 1.6e-84 316.6 205 72.7
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 2.7e-84 315.8 203 71.4
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 2.7e-84 315.8 201 73.6
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 3.5e-84 315.5 203 73.9
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 1.7e-83 313.2 201 71.6
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 1.2e-81 307.0 200 68.5
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 2.1e-81 306.2 199 70.4
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 6.8e-80 301.2 201 69.7
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 3.4e-79 298.9 199 69.8
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 5.4e-77 291.6 167 81.4
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 6.6e-75 284.6 185 71.4
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 2.5e-74 282.7 256 57.4
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 4.3e-74 282.0 167 76.6
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 9.5e-74 280.8 203 67.5
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 1.2e-73 280.4 168 74.4
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 5.4e-69 265.0 183 66.1
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 2.3e-67 259.6 203 63.1
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 3.3e-66 255.8 153 76.5
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 1.4e-64 250.4 188 57.4
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.7e-62 243.4 160 72.5
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 1.4e-61 240.4 209 62.7
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 1.2e-60 237.3 176 56.8
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 8.6e-59 231.1 205 55.6
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 1.9e-58 229.9 208 58.7
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 1.2e-55 220.7 217 50.2
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 8.3e-54 214.5 126 78.6
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 2.4e-53 213.0 132 74.2
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 6.8e-48 194.9 123 71.5
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 2.9e-46 189.5 128 78.9
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 3.8e-46 189.1 128 77.3
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 6.0e-44 181.8 148 52.7
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 1.7e-43 180.3 117 68.4
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 3.3e-42 176.0 104 76.0
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 9.0e-40 167.9 216 39.4
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 4.2e-37 159.1 102 73.5
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 2.7e-36 156.4 83 91.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.2e-30 136.7 227 31.7
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 4.2e-29 132.5 173 32.9
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 1.6e-25 120.6 108 52.8
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 3.7e-25 119.4 81 67.9
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 3.7e-25 119.4 71 74.6
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 2.0e-23 113.6 54 96.3
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 1.3e-22 110.9 71 77.5
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 1.3e-22 110.9 74 64.9
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 7.9e-20 101.7 55 96.4
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 1.3e-19 100.9 59 69.5
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 1.1e-16 91.3 187 40.1
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 2.2e-09 67.0 54 61.1
BcaB01g00436 Brassica carinata HOM05D006727 ORTHO05D008408 2.4e-08 63.5 71 57.7


User provided reference genes

Program Settings