Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G51500 Arabidopsis thaliana HOM05D006398 ORTHO05D007983 5.5e-46 187.6 117 100.0
AL5G31940 Arabidopsis lyrata HOM05D006398 ORTHO05D007983 4.2e-38 161.4 117 91.5
Carub.0005s1788 Capsella rubella HOM05D006398 ORTHO05D007983 2.4e-33 145.6 117 82.1
CARHR161080 Cardamine hirsuta HOM05D006398 ORTHO05D007983 2.7e-32 142.1 117 82.9
Thhalv10010838m.g Eutrema salsugineum HOM05D006398 ORTHO05D007983 1.0e-31 140.2 117 82.1
Sp5g10740 Schrenkiella parvula HOM05D006398 ORTHO05D007983 1.0e-28 130.2 119 79.8
BcaC06g33030 Brassica carinata HOM05D006398 ORTHO05D007983 6.6e-23 110.9 115 73.0
BcaNung00381 Brassica carinata HOM05D006398 ORTHO05D007983 5.6e-22 107.8 119 71.4
C07p46340 Brassica napus HOM05D006398 ORTHO05D007983 1.8e-20 102.8 117 70.9
C01p29040 Brassica napus HOM05D006398 ORTHO05D007983 5.2e-20 101.3 119 70.6
BolC1t02836H Brassica oleracea HOM05D006398 ORTHO05D007983 5.2e-20 101.3 119 70.6
A03p48310 Brassica napus HOM05D006398 ORTHO05D007983 1.2e-19 100.1 106 59.4
BolC7t45152H Brassica oleracea HOM05D006398 ORTHO05D007983 7.5e-19 97.4 117 69.2
BraA01t02248Z Brassica rapa HOM05D006398 ORTHO05D007983 2.9e-18 95.5 117 68.4
A01p23410 Brassica napus HOM05D006398 ORTHO05D007983 1.1e-17 93.6 117 67.5
THA.LOC109117268 Tarenaya hassleriana HOM05D006398 ORTHO05D007983 1.5e-14 83.2 124 55.6
COL.COLO4_15698 Corchorus olitorius HOM05D006398 ORTHO05D007983 5.6e-14 81.3 137 49.6
Thecc.04G122700 Theobroma cacao HOM05D006398 ORTHO05D007983 1.6e-13 79.7 118 47.5
Atru.chr3.7 Acer truncatum HOM05D006398 ORTHO05D007983 8.1e-13 77.4 134 41.0
Aa31LG4G7260 Aethionema arabicum HOM05D000087 ORTHO05D002585 8.1e-13 77.4 116 56.9
CSS0002146 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 8.1e-13 77.4 97 47.4
CSS0046434 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 8.1e-13 77.4 97 47.4
Manes.02G117704 Manihot esculenta HOM05D006398 ORTHO05D007983 5.2e-12 74.7 96 49.0
Lj4P245T44 Lonicera japonica HOM05D006398 ORTHO05D007983 1.2e-11 73.6 140 38.6
Manes.01G158600 Manihot esculenta HOM05D006398 ORTHO05D007983 1.5e-11 73.2 136 42.6
Gohir.A07G076575 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.0e-11 72.8 114 53.5
CANSAT56G1034 Cannabis sativa HOM05D006398 ORTHO05D007983 4.4e-11 71.6 95 65.3
Nitab4.5_0011544g0020 Nicotiana tabacum HOM05D006398 ORTHO05D007983 4.4e-11 71.6 100 48.0
Prupe.7G188600 Prunus persica HOM05D006398 ORTHO05D007983 4.4e-11 71.6 137 44.5
Rhsim10G0190200 Rhododendron simsii HOM05D006398 ORTHO05D007983 4.4e-11 71.6 94 46.8
Duzib133G0235 Durio zibethinus HOM05D006398 ORTHO05D007983 5.8e-11 71.2 141 44.7
Hma1.2p1_0085F.1_g044270 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 5.8e-11 71.2 122 42.6
PGR119G1180 Punica granatum HOM05D006398 ORTHO05D007983 5.8e-11 71.2 102 56.9
Cfa000559 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.3e-10 70.1 92 47.8
Dinv24399 Davidia involucrata HOM05D006398 ORTHO05D007983 1.3e-10 70.1 94 47.9
Dinv28289 Davidia involucrata HOM05D006398 ORTHO05D007983 1.3e-10 70.1 94 47.9
PGR042G1229 Punica granatum HOM05D006398 ORTHO05D007983 1.3e-10 70.1 102 58.8
vmacro20410 Vaccinium macrocarpon HOM05D006398 ORTHO05D007983 1.3e-10 70.1 117 37.6
Cfa011161 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.7e-10 69.7 92 56.5
MELO3C007985.2 Cucumis melo HOM05D006398 ORTHO05D007983 1.7e-10 69.7 112 40.2
Dinv19113 Davidia involucrata HOM05D006398 ORTHO05D007983 1.7e-10 69.7 142 40.1
Haze_03650 Corylus avellana HOM05D000071 ORTHO05D007983 2.2e-10 69.3 92 63.0
CsaV3_6G047960 Cucumis sativus L. HOM05D006398 ORTHO05D007983 2.2e-10 69.3 112 42.0
FvH4_1g09810 Fragaria vesca HOM05D006398 ORTHO05D007983 2.2e-10 69.3 137 38.7
FAN19G1193 Fragaria x ananassa HOM05D006398 ORTHO05D007983 2.2e-10 69.3 137 38.7
Nitab4.5_0012518g0010 Nicotiana tabacum HOM05D006398 ORTHO05D007983 2.2e-10 69.3 100 46.0
Actinidia28761 Actinidia chinensis HOM05D006398 ORTHO05D007983 2.9e-10 68.9 101 51.5
CiPaw.03G212200 Carya illinoinensis HOM05D006398 ORTHO05D007983 2.9e-10 68.9 92 56.5
FAN23G0152 Fragaria x ananassa HOM05D006398 ORTHO05D007983 2.9e-10 68.9 137 38.7
FAN26G0304 Fragaria x ananassa HOM05D006398 ORTHO05D007983 2.9e-10 68.9 137 38.7
Gorai.001G086400 Gossypium raimondii HOM05D006398 ORTHO05D007983 3.7e-10 68.6 114 50.0
Lj2g0016631 Lotus japonicus HOM05D006398 ORTHO05D007983 4.9e-10 68.2 138 44.2
MSTRG.19082 Avicennia marina HOM05D006398 ORTHO05D007983 6.4e-10 67.8 96 49.0
Gohir.D07G081300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 6.4e-10 67.8 114 50.0
TAR376G1029 Trochodendron aralioides HOM05D006398 ORTHO05D007983 6.4e-10 67.8 94 45.7
DCAR_014127 Daucus carota HOM05D006398 ORTHO05D007983 8.3e-10 67.4 133 37.6
Oeu024785.2 Olea europaea HOM05D006398 ORTHO05D007983 8.3e-10 67.4 90 47.8
QL06p053503 Quercus lobata HOM05D006398 ORTHO05D007983 8.3e-10 67.4 89 61.8
Cfa007121 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.4e-09 66.6 92 63.0
Gohir.D11G173600 Gossypium hirsutum HOM05D006398 ORTHO05D007983 1.4e-09 66.6 95 52.6
Gorai.007G185900 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.4e-09 66.6 95 52.6
TAR381G1497 Trochodendron aralioides HOM05D006398 ORTHO05D007983 1.4e-09 66.6 118 41.5
ATR0605G223 Amborella trichopoda HOM05D006398 ORTHO05D007983 1.9e-09 66.2 95 51.6
SalBow3G3387 Salvia bowleyana HOM05D006398 ORTHO05D007983 1.9e-09 66.2 88 45.5
Sopen02g017390 Solanum pennellii HOM05D006398 ORTHO05D007983 1.9e-09 66.2 100 45.0
SGA_v2.0_scaffold126G33784 Striga asiatica HOM05D006398 ORTHO05D007983 1.9e-09 66.2 116 39.7
Aa31LG4G7270 Aethionema arabicum HOM05D000087 ORTHO05D007983 2.4e-09 65.9 116 53.4
Ciclev10026700m.g Citrus clementina HOM05D006398 ORTHO05D007983 2.4e-09 65.9 98 55.1
Gohir.A11G167300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 3.2e-09 65.5 95 52.6
MBI04_g11522_MAGBIO Magnolia biondii HOM05D006398 ORTHO05D007983 3.2e-09 65.5 94 46.8
RcHm_v2.0_Chr2g0096641 Rosa chinensis HOM05D006398 ORTHO05D007983 3.2e-09 65.5 136 46.3
ECA238G1438 Erigeron canadensis HOM05D006398 ORTHO05D007983 4.1e-09 65.1 125 40.8
Nn6g31587 Nelumbo nucifera HOM05D006398 ORTHO05D007983 5.4e-09 64.7 143 41.3
Cfa012756 Carpinus fangiana HOM05D006398 ORTHO05D007983 7.1e-09 64.3 92 60.9
Eucgr.J02575 Eucalyptus grandis HOM05D006398 ORTHO05D007983 9.2e-09 63.9 141 48.9
Medtr5g025015 Medicago truncatula HOM05D006398 ORTHO05D007983 9.2e-09 63.9 139 40.3
Solyc02g068290.2 Solanum lycopersicum HOM05D006398 ORTHO05D007983 9.2e-09 63.9 100 44.0
Peaxi162Scf00981g00021 Petunia axillaris HOM05D006398 ORTHO05D007983 1.2e-08 63.5 99 49.5
HanXRQChr10g0316121 Helianthus annuus HOM05D006398 ORTHO05D007983 1.6e-08 63.2 122 37.7
Sed0010545 Sechium edule HOM05D006398 ORTHO05D007983 2.1e-08 62.8 93 46.2
TPR.G33762 Trifolium pratense HOM05D006398 ORTHO05D007983 2.1e-08 62.8 139 39.6
TWI53G1768 Tripterygium wilfordii HOM05D006398 ORTHO05D007983 2.1e-08 62.8 141 47.5
Hma1.2p1_0353F.1_g133130 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 2.7e-08 62.4 116 39.7
Lalb_Chr16g0380261 Lupinus albus HOM05D006398 ORTHO05D007983 2.7e-08 62.4 98 50.0
MD15G1226600 Malus domestica HOM05D006398 ORTHO05D007983 4.6e-08 61.6 120 41.7
Lsat_1_v5_gn_2_72860 Lactuca sativa HOM05D006398 ORTHO05D007983 6.0e-08 61.2 58 55.2
PSO017G0885 Papaver somniferum HOM05D006398 ORTHO05D007983 6.0e-08 61.2 94 44.7
PSO017G7180 Papaver somniferum HOM05D006398 ORTHO05D007983 7.8e-08 60.8 94 44.7
Psat2g147080 Pisum sativum HOM05D006398 ORTHO05D007983 7.8e-08 60.8 139 38.8
CDE04G3216 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.0e-07 60.5 67 49.3
Oeu000786.1 Olea europaea HOM05D006398 ORTHO05D007983 1.0e-07 60.5 90 54.4
CDE06G2001 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.3e-07 60.1 115 38.3
EL10Ac5g11754 Beta vulgaris HOM05D006398 ORTHO05D007983 1.7e-07 59.7 119 37.8
CAN.G883.23 Capsicum annuum HOM05D006398 ORTHO05D007983 2.3e-07 59.3 99 51.5
Potri.011G146400 Populus trichocarpa HOM05D006398 ORTHO05D007983 2.3e-07 59.3 111 36.9
PGSC0003DMG400009426 Solanum tuberosum HOM05D006398 ORTHO05D007983 2.3e-07 59.3 115 37.4
FAN28G0584 Fragaria x ananassa HOM05D006398 ORTHO05D007983 3.9e-07 58.5 133 39.8
VMungo1215G0575 Vigna mungo HOM05D006398 ORTHO05D007983 3.9e-07 58.5 139 49.6
Ah.02g115220 Amaranthus hybridus HOM05D006398 ORTHO05D007983 5.1e-07 58.2 106 39.6
Ca_25041_v3 Cicer arietinum L. HOM05D006398 ORTHO05D007983 5.1e-07 58.2 141 36.9
Glyma.11G089000 Glycine max HOM05D006398 ORTHO05D007983 6.6e-07 57.8 138 51.4
Sed0016714 Sechium edule HOM05D006398 ORTHO05D007983 6.6e-07 57.8 87 54.0
Glyma.01G155800 Glycine max HOM05D006398 ORTHO05D007983 8.6e-07 57.4 92 57.6
MD02G1107400 Malus domestica HOM05D006398 ORTHO05D007983 8.6e-07 57.4 80 47.5
Sabra11G0131300 Salix brachista HOM05D006398 ORTHO05D007983 8.6e-07 57.4 140 34.3
Migut.J00328 Erythranthe guttata HOM05D006398 ORTHO05D007983 1.5e-06 56.6 114 36.0
Sc03g0004180 Simmondsia chinensis HOM05D006398 ORTHO05D007983 1.9e-06 56.2 99 52.5
Sabra16G0308300 Salix brachista HOM05D006398 ORTHO05D007983 2.5e-06 55.8 92 41.3
Phvul.002G119800 Phaseolus vulgaris HOM05D006398 ORTHO05D007983 3.3e-06 55.5 72 65.3
Zm00001eb236520 Zea mays HOM05D006398 ORTHO05D007983 7.3e-06 54.3 59 67.8
SEGI_02084 Sequoiadendron giganteum HOM05D006398 ORTHO05D007983 9.5e-06 53.9 65 53.8


User provided reference genes

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