Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 1.4e-250 869.0 411 100.0
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 3.7e-246 854.4 411 98.3
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 1.3e-243 845.9 411 97.3
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 6.7e-240 833.6 411 95.4
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 1.5e-239 832.4 411 94.4
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.6e-236 822.4 411 94.6
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 2.2e-230 802.0 411 91.7
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 3.1e-229 798.1 399 93.7
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 1.6e-225 785.8 399 91.5
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 2.3e-224 781.9 383 94.5
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 2.3e-224 781.9 383 94.5
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 2.4e-221 771.9 385 93.2
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.9e-218 762.3 396 89.4
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 4.3e-218 761.1 396 89.1
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 2.8e-217 758.4 396 89.1
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 1.4e-216 756.1 406 88.2
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 7.5e-215 750.4 400 85.8
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.7e-214 749.2 400 86.8
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 6.4e-214 747.3 403 86.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 9.2e-213 743.4 403 85.4
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 2.0e-212 742.3 398 86.7
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 3.5e-212 741.5 400 84.2
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 4.6e-212 741.1 397 85.6
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 6.0e-212 740.7 400 84.0
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 6.0e-212 740.7 400 84.0
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 7.8e-212 740.3 399 84.5
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 3.0e-211 738.4 403 85.1
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 3.9e-211 738.0 401 84.8
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 6.6e-211 737.3 405 85.4
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 1.1e-210 736.5 400 84.2
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.1e-209 732.3 402 84.6
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 6.2e-209 730.7 405 84.0
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 6.2e-209 730.7 402 83.3
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 8.0e-209 730.3 405 83.5
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 1.1e-208 729.9 404 83.4
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 1.1e-208 729.9 403 84.9
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.3e-208 728.8 404 84.2
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 4.0e-208 728.0 405 83.5
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 5.2e-208 727.6 400 83.2
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 8.9e-208 726.9 372 90.1
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 8.9e-208 726.9 399 84.2
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 2.0e-207 725.7 405 83.7
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 2.0e-207 725.7 404 83.7
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 3.4e-207 724.9 401 83.3
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 4.4e-207 724.5 400 83.0
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 5.8e-207 724.2 405 83.0
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 5.8e-207 724.2 398 84.2
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 9.8e-207 723.4 405 83.7
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 9.8e-207 723.4 404 82.2
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 1.3e-206 723.0 406 83.0
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.2e-206 722.2 418 80.4
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 4.9e-206 721.1 405 82.0
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 4.9e-206 721.1 415 82.4
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 8.3e-206 720.3 405 83.0
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 8.3e-206 720.3 399 84.0
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 8.3e-206 720.3 399 83.0
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.9e-205 719.2 409 82.2
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 2.4e-205 718.8 403 82.4
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 3.2e-205 718.4 402 83.1
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 4.1e-205 718.0 411 82.0
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 5.4e-205 717.6 402 82.3
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 9.2e-205 716.8 387 84.2
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 2.3e-203 712.2 404 81.2
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 3.9e-203 711.4 404 82.4
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 3.9e-203 711.4 390 84.1
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.5e-202 709.5 401 81.5
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 1.9e-202 709.1 434 78.1
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 3.3e-202 708.4 400 82.5
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 9.5e-202 706.8 390 83.6
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 4.7e-201 704.5 403 81.4
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 1.1e-200 703.4 391 83.4
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 1.1e-200 703.4 403 81.1
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 1.1e-200 703.4 403 81.1
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.8e-200 702.6 404 81.7
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 3.1e-200 701.8 402 81.8
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 6.8e-200 700.7 401 79.8
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.5e-199 699.5 410 80.0
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 2.0e-199 699.1 403 80.9
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 9.9e-199 696.8 389 82.3
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 4.9e-198 694.5 396 81.1
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 6.4e-198 694.1 395 81.3
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.9e-197 692.6 403 80.9
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 9.2e-197 690.3 353 90.4
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 1.6e-196 689.5 414 79.0
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.6e-196 689.5 432 75.0
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 2.1e-196 689.1 400 81.2
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 7.8e-196 687.2 402 79.6
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 8.6e-195 683.7 402 79.1
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 1.5e-194 682.9 420 77.4
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.5e-194 682.9 402 78.9
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 1.2e-193 679.9 400 80.0
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.1e-193 679.1 397 80.1
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 6.2e-193 677.6 391 79.5
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 6.2e-193 677.6 399 79.4
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 8.9e-192 673.7 415 76.9
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.2e-189 664.8 387 80.9
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 3.5e-188 661.8 364 83.2
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 6.2e-185 651.0 380 80.5
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 4.4e-183 644.8 403 75.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 4.9e-182 641.3 403 75.4
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 4.9e-182 641.3 396 75.3
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.9e-181 639.4 407 75.9
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 5.4e-181 637.9 400 75.2
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.6e-180 636.3 357 82.1
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 5.6e-178 627.9 401 74.8
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 8.4e-174 614.0 399 73.4
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 2.3e-171 605.9 341 81.8
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 3.1e-168 595.5 333 80.8
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 4.6e-164 581.6 392 71.4
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 6.7e-163 577.8 393 67.9
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 2.5e-162 575.9 398 68.6
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 2.1e-161 572.8 391 67.0
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 3.4e-159 565.5 394 66.0
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 1.8e-155 553.1 305 83.6
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.6e-153 546.6 306 83.0
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 3.6e-148 528.9 345 72.8
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.4e-147 526.9 306 80.4
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.1e-146 523.9 400 62.8
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 7.7e-143 511.1 393 61.1
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 1.4e-115 420.6 239 83.3
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.2e-103 380.9 266 66.2
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 3.0e-94 349.7 208 78.4
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 4.1e-88 329.3 183 82.0
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 5.6e-85 318.9 368 50.5
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.1e-84 317.0 218 71.1
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.8e-84 316.6 171 82.5
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 1.7e-81 307.4 163 82.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.9e-81 305.8 434 39.9
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 3.9e-78 296.2 221 63.8
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.0e-70 271.6 141 87.9
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 5.1e-70 269.2 146 82.2
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.1e-60 237.3 172 64.0
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.3e-46 191.4 189 53.4
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.2e-31 141.7 72 87.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 5.1e-22 109.8 198 38.4
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 8.0e-15 85.9 276 27.2
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 1.9e-08 64.7 51 62.7


User provided reference genes

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