Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 5.4e-153 544.3 273 100.0
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.0e-147 525.8 274 97.4
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 6.0e-144 514.2 275 94.5
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 7.9e-144 513.8 276 94.9
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 2.3e-143 512.3 275 93.8
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 8.7e-143 510.4 275 93.8
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 2.5e-142 508.8 275 93.5
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 5.6e-142 507.7 275 93.5
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 7.4e-142 507.3 275 93.5
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 7.4e-142 507.3 275 93.5
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 7.4e-142 507.3 275 93.5
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 1.4e-140 503.1 275 92.4
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 5.3e-140 501.1 275 92.0
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 6.9e-140 500.7 275 91.6
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 1.2e-139 500.0 275 91.6
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 2.6e-139 498.8 275 91.6
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 7.9e-120 434.1 277 83.4
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 3.8e-114 415.2 271 79.7
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 4.8e-109 398.3 275 74.2
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.2e-105 385.6 271 73.8
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 7.2e-105 384.4 271 73.8
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 4.7e-104 381.7 211 92.9
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.7e-104 381.7 273 74.0
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 1.0e-103 380.6 271 73.1
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 1.4e-103 380.2 271 72.7
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 8.8e-103 377.5 274 72.6
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 1.5e-102 376.7 271 72.0
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 3.3e-102 375.6 267 72.3
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 4.4e-102 375.2 272 72.8
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 1.7e-101 373.2 206 94.2
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 5.3e-100 368.2 269 71.7
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 5.3e-100 368.2 264 72.3
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 7.0e-100 367.9 272 70.2
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 1.6e-99 366.7 271 70.8
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 1.0e-98 364.0 271 70.1
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 1.0e-98 364.0 270 70.7
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 2.9e-98 362.5 272 69.5
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 3.8e-98 362.1 268 69.8
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 5.0e-98 361.7 281 67.6
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 5.0e-98 361.7 275 69.5
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 1.5e-97 360.1 273 68.5
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 1.9e-97 359.8 272 68.4
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 3.2e-97 359.0 277 68.2
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 3.2e-97 359.0 275 68.7
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 4.2e-97 358.6 277 67.9
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 5.5e-97 358.2 272 66.9
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 7.2e-97 357.8 271 68.6
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 7.2e-97 357.8 268 69.8
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 9.4e-97 357.5 296 64.5
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 1.6e-96 356.7 271 68.3
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 3.6e-96 355.5 284 65.5
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 1.0e-95 354.0 271 69.0
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 1.4e-95 353.6 271 68.6
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 1.8e-95 353.2 266 68.4
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.3e-95 352.8 273 68.9
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 3.0e-95 352.4 273 67.8
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 6.7e-95 351.3 268 70.1
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 8.8e-95 350.9 270 65.6
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 8.8e-95 350.9 273 67.0
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 1.2e-94 350.5 271 67.5
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 1.5e-94 350.1 268 68.3
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.5e-94 350.1 270 65.6
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 1.5e-94 350.1 268 69.8
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 2.0e-94 349.7 271 67.9
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 2.6e-94 349.4 261 69.0
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 3.3e-94 349.0 272 69.5
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 3.3e-94 349.0 264 68.6
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 4.4e-94 348.6 271 67.2
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 5.7e-94 348.2 272 66.2
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 5.7e-94 348.2 273 67.4
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 7.5e-94 347.8 269 68.0
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 9.7e-94 347.4 270 69.3
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 9.7e-94 347.4 276 66.7
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 9.7e-94 347.4 269 67.7
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 9.7e-94 347.4 262 69.8
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 1.3e-93 347.1 271 66.4
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.3e-93 347.1 269 66.9
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 2.2e-93 346.3 273 67.4
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 2.8e-93 345.9 271 66.4
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 3.7e-93 345.5 298 63.1
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 6.3e-93 344.7 273 65.9
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 1.1e-92 344.0 274 66.4
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.4e-92 343.6 271 67.9
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.8e-92 343.2 269 66.9
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.8e-92 343.2 271 66.8
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 3.1e-92 342.4 271 66.8
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 4.1e-92 342.0 265 67.2
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 5.3e-92 341.7 271 67.2
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 7.0e-92 341.3 285 62.1
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 7.0e-92 341.3 273 65.9
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 7.0e-92 341.3 271 67.2
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 1.6e-91 340.1 269 66.2
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 4.5e-91 338.6 285 61.8
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 5.9e-91 338.2 285 61.8
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 5.9e-91 338.2 285 61.8
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 1.3e-90 337.0 283 65.7
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 2.9e-90 335.9 269 68.4
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 5.0e-90 335.1 264 66.7
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 5.0e-90 335.1 264 65.9
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 1.1e-89 334.0 272 65.8
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 5.5e-89 331.6 279 63.1
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 7.2e-89 331.3 270 64.1
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.6e-88 330.1 272 63.2
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 3.6e-88 328.9 272 65.1
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 8.0e-88 327.8 241 70.5
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 1.4e-87 327.0 280 63.2
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 8.8e-87 324.3 293 61.4
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 5.7e-86 321.6 266 65.4
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 1.7e-85 320.1 292 58.9
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 2.8e-85 319.3 271 63.5
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 2.8e-85 319.3 268 65.3
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 6.3e-85 318.2 287 61.3
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 3.8e-82 308.9 262 62.2
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 6.6e-82 308.1 280 62.1
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 2.5e-81 306.2 271 61.6
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 1.8e-79 300.1 284 60.9
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 2.3e-79 299.7 216 75.0
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 8.9e-79 297.7 204 77.5
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 8.9e-79 297.7 262 59.5
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 4.4e-78 295.4 205 76.1
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 5.7e-78 295.0 284 60.2
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 1.3e-77 293.9 271 57.9
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 4.1e-76 288.9 229 68.1
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 1.2e-75 287.3 267 58.4
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 4.5e-75 285.4 270 59.6
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 9.5e-73 277.7 223 64.6
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 3.2e-68 262.7 282 54.6
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 2.1e-64 250.0 265 51.3
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 2.1e-64 250.0 263 52.5
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.1e-60 237.7 166 75.3
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 2.7e-59 233.0 269 49.8
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 1.3e-58 230.7 217 58.5
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 3.0e-58 229.6 177 71.8
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 1.1e-55 221.1 284 45.1
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 8.9e-55 218.0 172 68.0
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 1.4e-47 194.1 188 59.0
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 4.3e-41 172.6 129 65.9
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 3.2e-36 156.4 130 58.5
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 1.5e-30 137.5 268 34.3
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 9.9e-30 134.8 254 32.3
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 2.9e-29 133.3 85 82.4
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 1.0e-21 108.2 110 49.1
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 9.3e-12 75.1 184 28.8
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 7.4e-09 65.5 62 48.4
PGR119G1630 Punica granatum HOM05D001489 ORTHO05D001380 7.4e-09 65.5 183 27.3
SGA_v2.0_scaffold166G38366 Striga asiatica HOM05D003236 ORTHO05D003620 2.2e-08 63.9 180 28.9
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 6.3e-08 62.4 179 28.5
Zm00001eb080970 Zea mays HOM05D002673 ORTHO05D002766 6.3e-08 62.4 176 30.1
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 1.1e-07 61.6 204 26.5
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 1.1e-07 61.6 179 28.5
unitig_747.g21751 Utricularia gibba HOM05D002673 ORTHO05D002766 1.1e-07 61.6 172 29.1
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 1.4e-07 61.2 179 29.1
MBI17_g40447_MAGBIO Magnolia biondii HOM05D000182 ORTHO05D000112 1.4e-07 61.2 242 27.7
Gohir.D05G232800 Gossypium hirsutum HOM05D003236 ORTHO05D003620 4.1e-07 59.7 179 26.3
Gorai.N027600 Gossypium raimondii HOM05D003236 ORTHO05D003620 4.1e-07 59.7 179 26.8
SalBow2G2662 Salvia bowleyana HOM05D003236 ORTHO05D003620 4.1e-07 59.7 180 28.3
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 5.3e-07 59.3 205 26.3
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 5.3e-07 59.3 179 29.1
Manes.08G075500 Manihot esculenta HOM05D003236 ORTHO05D003620 1.2e-06 58.2 179 28.5
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 1.5e-06 57.8 204 25.0
MBI17_g13566_MAGBIO Magnolia biondii HOM05D003236 ORTHO05D003620 1.5e-06 57.8 226 27.4
CANSAT56G0357 Cannabis sativa HOM05D003236 ORTHO05D003620 2.0e-06 57.4 203 26.1
MBI17_g47643_MAGBIO Magnolia biondii HOM05D000182 ORTHO05D000112 2.6e-06 57.0 242 26.9
FAN08G2949 Fragaria x ananassa HOM05D003236 ORTHO05D003620 3.4e-06 56.6 216 26.4
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 3.4e-06 56.6 196 25.5
FvH4_4g14820 Fragaria vesca HOM05D003236 ORTHO05D003620 4.5e-06 56.2 217 26.3
FAN12G2674 Fragaria x ananassa HOM05D003236 ORTHO05D003620 4.5e-06 56.2 217 26.3
Gohir.A05G230300 Gossypium hirsutum HOM05D003236 ORTHO05D003620 4.5e-06 56.2 179 25.7
RcHm_v2.0_Chr4g0417501 Rosa chinensis HOM05D003236 ORTHO05D003620 4.5e-06 56.2 196 26.0
Hund19506 Selenicereus undatus HOM05D003236 ORTHO05D003620 4.5e-06 56.2 180 28.3
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 5.9e-06 55.8 179 27.4
FAN04G3165 Fragaria x ananassa HOM05D003236 ORTHO05D003620 5.9e-06 55.8 216 25.9
Gohir.A05G230350 Gossypium hirsutum HOM05D003236 ORTHO05D003620 5.9e-06 55.8 171 26.3
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 5.9e-06 55.8 179 26.3
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 5.9e-06 55.8 182 27.5
Rhsim04G0203500 Rhododendron simsii HOM05D003236 ORTHO05D003620 7.7e-06 55.5 205 25.9
SEGI_23586 Sequoiadendron giganteum HOM05D003236 ORTHO05D003620 7.7e-06 55.5 196 25.5


User provided reference genes

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