Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G50470 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 1.4e-111 406.4 214 100.0
AL5G30620 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 3.9e-106 388.3 214 95.3
Carub.0005s1680 Capsella rubella HOM05D008738 ORTHO05D010755 2.0e-102 375.9 214 92.1
Thhalv10010714m.g Eutrema salsugineum HOM05D008738 ORTHO05D010755 3.9e-90 335.1 214 82.2
BcaB01g00614 Brassica carinata HOM05D008738 ORTHO05D010755 5.7e-81 304.7 216 75.0
BcaB01g00613 Brassica carinata HOM05D008738 ORTHO05D010755 3.1e-79 298.9 214 75.2
CARHR159990 Cardamine hirsuta HOM05D008738 ORTHO05D010755 4.1e-79 298.5 215 74.0
BraA09t39815Z Brassica rapa HOM05D008738 ORTHO05D010755 3.8e-77 292.0 218 73.4
A09p43500 Brassica napus HOM05D008738 ORTHO05D010755 5.0e-77 291.6 218 73.4
BcaC07g39509 Brassica carinata HOM05D008738 ORTHO05D010755 1.4e-76 290.0 218 72.9
BolC8t50176H Brassica oleracea HOM05D008738 ORTHO05D010755 4.7e-75 285.0 216 72.2
A09p43510 Brassica napus HOM05D008738 ORTHO05D010755 7.9e-75 284.3 217 73.3
BcaC07g39511 Brassica carinata HOM05D008738 ORTHO05D010755 1.5e-73 280.0 216 73.1
A09p43530 Brassica napus HOM05D008738 ORTHO05D010755 6.3e-72 274.6 216 72.7
C08p25550 Brassica napus HOM05D008738 ORTHO05D010755 1.1e-71 273.9 216 70.8
BraA09t39816Z Brassica rapa HOM05D008738 ORTHO05D010755 2.4e-71 272.7 217 71.4
BraA09t39817Z Brassica rapa HOM05D008738 ORTHO05D010755 4.1e-71 271.9 216 71.3
AT3G50460 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 1.2e-70 270.4 214 68.2
AL5G30610 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 4.5e-70 268.5 214 67.3
CARHR159980 Cardamine hirsuta HOM05D008738 ORTHO05D010755 2.1e-67 259.6 213 66.7
A03p47800 Brassica napus HOM05D008738 ORTHO05D010755 3.6e-67 258.8 212 70.3
BraA03t13890Z Brassica rapa HOM05D008738 ORTHO05D010755 3.6e-67 258.8 212 70.3
BcaC06g33094 Brassica carinata HOM05D008738 ORTHO05D010755 4.7e-67 258.5 210 69.0
AL5G30630 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 5.2e-66 255.0 213 65.7
Aa31LG4G18690 Aethionema arabicum HOM05D008738 ORTHO05D010755 4.4e-65 251.9 217 62.7
Carub.0005s1679 Capsella rubella HOM05D008738 ORTHO05D010755 2.8e-64 249.2 195 68.7
AL5G30600 Arabidopsis lyrata HOM05D008738 ORTHO05D010755 1.2e-62 243.8 215 63.7
A09p43550 Brassica napus HOM05D008738 ORTHO05D010755 1.6e-59 233.4 216 64.4
AT3G50450 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 4.8e-56 221.9 215 58.1
C08p25540 Brassica napus HOM05D008738 ORTHO05D010755 7.5e-49 198.0 153 73.2
Aa31LG4G18680 Aethionema arabicum HOM05D008738 ORTHO05D010755 4.3e-28 129.0 158 46.2
BcaB01g00612 Brassica carinata HOM05D008738 ORTHO05D010755 5.1e-21 105.5 202 39.6
BcaC06g33093 Brassica carinata HOM05D008738 ORTHO05D010755 8.6e-21 104.8 144 47.2
AT3G50480 Arabidopsis thaliana HOM05D008738 ORTHO05D010755 7.8e-14 81.6 151 38.4
C07p45760 Brassica napus HOM05D008738 ORTHO05D010755 9.6e-12 74.7 85 55.3
PSO210G7782 Papaver somniferum HOM05D000033 ORTHO05D030421 2.1e-11 73.6 141 28.4
Haze_15455 Corylus avellana HOM05D008738 ORTHO05D010755 4.0e-10 69.3 179 25.1
Cfa003965 Carpinus fangiana HOM05D008738 ORTHO05D010755 1.5e-09 67.4 135 24.4
Prupe.7G140100 Prunus persica HOM05D008738 ORTHO05D010755 1.5e-09 67.4 141 32.6
CiPaw.02G010900 Carya illinoinensis HOM05D008738 ORTHO05D010755 2.0e-09 67.0 123 28.5
Manes.12G094400 Manihot esculenta HOM05D058365 ORTHO05D010755 2.0e-09 67.0 209 28.2
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 5.8e-09 65.5 136 32.4
MD02G1163800 Malus domestica HOM05D008738 ORTHO05D010755 7.6e-09 65.1 142 29.6
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 7.6e-09 65.1 140 30.0
CiPaw.02G011200 Carya illinoinensis HOM05D008738 ORTHO05D010755 9.9e-09 64.7 123 28.5
Haze_15456 Corylus avellana HOM05D008738 ORTHO05D010755 1.3e-08 64.3 119 25.2
Manes.12G094300 Manihot esculenta HOM05D058365 ORTHO05D010755 3.8e-08 62.8 202 29.2
RcHm_v2.0_Chr2g0104171 Rosa chinensis HOM05D000529 ORTHO05D000472 4.9e-08 62.4 142 27.5
Nn5g29351 Nelumbo nucifera HOM05D000529 ORTHO05D000472 6.4e-08 62.0 130 30.0
Oeu036816.1 Olea europaea HOM05D000529 ORTHO05D036481 6.4e-08 62.0 142 28.9
Oeu005309.1 Olea europaea HOM05D000529 ORTHO05D000472 8.4e-08 61.6 162 27.2
Sabra07G0034600 Salix brachista HOM05D037871 ORTHO05D010755 1.1e-07 61.2 139 30.9
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 1.4e-07 60.8 136 30.9
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 5.4e-07 58.9 142 28.2
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 7.1e-07 58.5 115 27.8
Nitab4.5_0000681g0070 Nicotiana tabacum HOM05D000529 ORTHO05D010311 7.1e-07 58.5 139 28.8
GSVIVG01003555001 Vitis vinifera HOM05D000529 ORTHO05D000472 7.1e-07 58.5 127 33.1
GSVIVG01007146001 Vitis vinifera HOM05D000529 ORTHO05D000472 7.1e-07 58.5 127 32.3
Nn4g24847 Nelumbo nucifera HOM05D000529 ORTHO05D000472 9.3e-07 58.2 138 26.1
Cc07_g05690 Coffea canephora HOM05D000529 ORTHO05D010311 1.2e-06 57.8 139 28.8
QL06p042852 Quercus lobata HOM05D000529 ORTHO05D000472 2.1e-06 57.0 140 27.1
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 2.1e-06 57.0 116 29.3
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 3.5e-06 56.2 141 29.8
Solyc02g077060.2 Solanum lycopersicum HOM05D000529 ORTHO05D010311 3.5e-06 56.2 139 27.3
GSVIVG01003565001 Vitis vinifera HOM05D000529 ORTHO05D000472 6.0e-06 55.5 116 29.3
Oeu036791.1 Olea europaea HOM05D000529 ORTHO05D010311 7.8e-06 55.1 155 28.4
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 7.8e-06 55.1 114 30.7
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 7.8e-06 55.1 125 27.2
TWI53G1504 Tripterygium wilfordii HOM05D008738 ORTHO05D010755 7.8e-06 55.1 113 33.6


User provided reference genes

Program Settings