Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 0.0e+00 1302.3 643 100.0
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 0.0e+00 1127.5 651 87.7
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 1.1e-289 999.6 642 78.5
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 1.1e-268 929.9 650 74.3
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 4.3e-265 917.9 643 73.1
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 3.2e-244 848.6 640 69.2
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 1.7e-242 842.8 668 66.3
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 3.0e-242 842.0 639 69.2
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 5.6e-241 837.8 647 68.5
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 3.1e-239 832.0 627 69.9
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 9.9e-238 827.0 626 69.3
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 5.6e-217 758.1 462 82.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 1.4e-199 700.3 562 66.2
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 8.3e-168 594.7 597 54.1
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 4.6e-142 509.2 690 43.9
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 3.7e-136 489.6 694 40.3
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 6.0e-134 482.3 686 42.6
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.5e-132 477.6 692 40.9
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 3.6e-131 473.0 673 42.5
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 1.4e-130 471.1 715 39.7
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 4.0e-130 469.5 676 41.7
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 6.8e-130 468.8 673 41.2
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 6.8e-130 468.8 682 40.9
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 2.9e-128 463.4 680 41.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 2.4e-127 460.3 690 40.6
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 2.4e-127 460.3 689 39.8
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 2.7e-126 456.8 695 40.0
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.7e-125 454.1 719 39.4
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 5.1e-125 452.6 699 39.8
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.6e-125 451.8 670 40.7
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 1.9e-124 450.7 730 39.0
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 3.3e-124 449.9 682 40.3
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 2.1e-123 447.2 675 40.6
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 8.4e-120 435.3 697 38.9
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 4.2e-119 433.0 672 39.4
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 9.3e-119 431.8 676 40.5
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.6e-118 429.5 601 40.9
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 2.3e-117 427.2 675 40.1
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 3.0e-117 426.8 678 39.8
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 3.3e-116 423.3 669 38.6
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 4.8e-115 419.5 686 38.8
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 6.2e-115 419.1 691 38.8
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.1e-114 418.3 689 37.9
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.4e-114 417.9 609 41.5
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 1.8e-114 417.5 680 37.9
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 3.1e-114 416.8 689 38.2
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 2.6e-113 413.7 674 37.1
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.4e-111 407.9 678 38.2
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.4e-111 407.9 698 37.7
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 5.4e-111 406.0 679 37.1
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 5.4e-111 406.0 696 39.2
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 7.9e-110 402.1 663 37.6
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 2.3e-109 400.6 678 35.8
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 3.3e-108 396.7 680 36.0
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 4.8e-107 392.9 671 38.5
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.4e-106 391.3 620 38.5
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 5.3e-106 389.4 608 38.5
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 2.6e-105 387.1 702 36.2
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 2.2e-104 384.0 680 35.1
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 2.9e-104 383.6 685 37.5
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 5.5e-103 379.4 640 37.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 1.6e-102 377.9 653 36.9
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 3.5e-102 376.7 717 36.0
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 7.9e-102 375.6 673 35.5
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 6.7e-101 372.5 605 37.2
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 3.3e-100 370.2 675 34.5
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.6e-99 367.9 675 36.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 4.8e-99 366.3 579 38.3
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 8.1e-99 365.5 659 35.4
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.8e-98 364.4 688 35.2
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 1.2e-97 361.7 667 35.7
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 1.0e-96 358.6 692 34.4
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 3.8e-96 356.7 657 34.4
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 6.5e-96 355.9 541 39.6
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.4e-95 354.8 578 37.0
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 4.2e-95 353.2 577 37.3
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.1e-91 340.9 561 36.7
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 3.1e-90 337.0 658 36.0
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 8.4e-88 328.9 559 38.5
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 4.2e-87 326.6 738 33.2
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 9.7e-84 315.5 641 33.9
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 1.3e-83 315.1 656 32.9
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.1e-82 312.0 674 32.9
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.0e-80 305.4 676 32.8
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 6.5e-80 302.8 648 32.4
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.2e-79 300.1 573 34.2
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 5.1e-77 293.1 658 31.9
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 6.7e-77 292.7 661 32.2
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.3e-75 288.5 424 39.6
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 4.8e-75 286.6 403 40.0
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 2.0e-73 281.2 407 38.6
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 1.1e-71 275.4 658 31.9
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 1.9e-71 274.6 658 32.1
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 3.2e-71 273.9 343 45.5
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 2.0e-68 264.6 688 30.5
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 9.4e-63 245.7 688 28.2
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 6.3e-59 233.0 393 37.2
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 6.1e-54 216.5 377 37.7
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 8.0e-46 189.5 323 38.4
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.5e-39 168.7 191 51.8
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 9.5e-39 166.0 286 37.4
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 6.4e-35 153.3 361 32.4
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.9e-32 144.1 154 50.6
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 1.2e-22 112.5 560 24.8
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 8.1e-22 109.8 155 40.6
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 5.8e-20 103.6 633 24.8
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.7e-19 102.1 368 28.3
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 4.6e-17 94.0 136 42.6
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.0e-16 92.8 98 54.1
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.3e-15 86.7 59 72.9
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 7.3e-15 86.7 59 72.9
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 4.0e-13 80.9 308 25.6
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 3.5e-09 67.8 70 48.6
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.5e-09 67.8 262 27.5
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 5.1e-08 63.9 135 33.3
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 8.6e-08 63.2 187 29.4
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.5e-07 62.4 162 31.5
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.1e-06 56.6 57 54.4


User provided reference genes

Program Settings