Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 3979.9 2161 100.0
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 3721.4 2170 93.6
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 3415.6 2180 86.3
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 3267.6 2193 83.7
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 3121.3 2128 82.5
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 2937.1 2156 75.9
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 2878.2 2220 75.3
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 2288.1 2273 63.0
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 2232.2 2179 66.8
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 2019.6 2188 62.7
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 0.0e+00 2016.5 2190 62.1
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 0.0e+00 2016.5 2190 62.1
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 0.0e+00 2011.1 2193 62.5
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 0.0e+00 2004.9 2227 61.1
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 1458.0 2437 45.8
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1435.2 2451 45.9
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1406.0 2450 45.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1404.8 2438 45.2
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 1402.1 2480 45.1
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1375.9 2468 45.1
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 1360.1 2452 44.7
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1353.2 2479 43.7
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1335.1 2442 43.8
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1329.3 2414 43.6
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 1327.0 2486 43.3
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1326.6 2446 43.5
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1322.0 2441 43.7
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1318.1 2434 44.4
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1307.7 2436 43.4
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1297.3 2449 43.0
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1288.1 2458 42.8
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1287.3 2432 43.5
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1278.8 2437 43.0
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1277.3 2503 42.3
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1269.6 2441 42.9
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 1261.5 2461 43.1
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1260.7 2428 42.3
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1258.4 2426 42.8
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1258.0 2507 42.3
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1255.4 2508 42.2
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1249.2 2443 42.7
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1247.3 2510 41.9
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1241.5 2444 42.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1233.4 2426 42.7
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1229.2 2432 43.2
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1221.8 2438 43.2
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1211.1 2431 42.1
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1209.5 2364 43.5
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1207.6 2463 41.4
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1199.9 2414 41.7
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1196.8 2149 44.8
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1196.0 2243 43.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1186.8 2417 42.4
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1183.3 2422 42.4
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1178.3 2428 42.4
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1177.9 2487 40.4
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1174.1 2393 42.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1166.8 2396 41.9
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1165.2 2396 41.7
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1164.8 2371 42.4
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1161.0 2434 42.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1134.8 2369 40.2
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1129.8 2422 41.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1124.4 2388 41.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1118.6 2313 40.5
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1117.1 2433 40.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1109.0 2242 42.5
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1107.4 2451 39.2
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1103.6 2454 40.1
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1099.7 2369 40.2
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1098.6 2414 40.3
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1097.0 2460 40.2
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1095.9 2481 38.9
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1093.2 2436 40.4
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1090.9 2443 40.7
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1084.7 2460 40.4
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1082.8 2385 41.8
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1079.7 2481 40.1
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1077.8 2383 39.2
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 1.3e-310 1070.8 2405 40.5
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 6.5e-310 1068.5 2584 39.0
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 5.5e-309 1065.4 2418 40.2
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 9.5e-309 1064.7 2378 40.2
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 1.3e-305 1054.3 2432 39.7
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 2.4e-304 1050.0 2283 39.7
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 1.9e-301 1040.4 2009 43.6
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 8.0e-300 1035.0 2396 39.4
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 1.3e-297 1027.7 2411 39.3
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 1.4e-296 1024.2 2357 39.4
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 6.0e-295 1018.8 2238 39.8
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 2.5e-293 1013.4 2350 38.9
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 1.3e-289 1001.1 1814 44.1
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 1.4e-288 997.7 2372 39.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 1.5e-285 987.6 2427 39.0
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 1.4e-280 971.1 2437 38.5
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 1.5e-277 961.1 2384 38.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 2.5e-277 960.3 2339 38.3
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 4.4e-266 922.9 2367 37.6
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 4.9e-265 919.5 2279 39.2
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 1.5e-253 881.3 2298 36.8
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 8.1e-252 875.5 2229 36.7
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 1.9e-248 864.4 2298 36.8
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 2.3e-246 857.4 2259 37.7
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 2.0e-226 791.2 2236 35.2
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 1.5e-213 748.4 2355 34.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.3e-212 745.3 1569 42.4
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 1.7e-204 718.4 1665 37.6
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 9.4e-200 702.6 959 49.2
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 4.7e-191 673.7 1069 48.1
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 7.0e-187 659.8 2355 34.2
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.5e-173 615.5 1009 47.7
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.1e-170 605.1 1260 40.2
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 5.1e-161 573.9 2198 33.7
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.5e-152 545.8 2480 31.8
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.9e-120 439.1 1659 34.0
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 8.2e-119 433.7 2227 30.0
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.0e-113 416.8 1595 30.9
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.0e-112 412.5 882 43.0
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.1e-110 405.2 702 44.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.6e-109 402.1 962 39.6
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 1.5e-88 333.2 1694 30.4
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.9e-83 316.2 573 47.3
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 5.0e-76 291.6 448 46.9
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.5e-75 290.0 440 46.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-74 287.0 1326 31.4
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 5.7e-72 278.1 901 32.9
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.0e-65 255.4 1084 30.2
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.4e-64 251.9 722 34.6
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.9e-63 249.2 2100 27.5
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 6.6e-60 238.0 750 32.9
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.3e-51 209.1 447 39.1
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 4.9e-47 195.3 280 45.7
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 2.4e-41 176.4 2150 25.8
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.2e-39 169.9 445 32.6
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.1e-37 163.3 2435 25.5
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.1e-34 153.3 505 33.1
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.8e-34 152.9 929 31.0
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 5.3e-33 148.7 202 50.0
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-32 147.5 2431 24.5
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 2.6e-32 146.4 491 31.4
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.5e-32 145.6 202 49.5
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 7.4e-27 128.3 2425 24.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.0e-25 122.5 149 50.3
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 5.3e-25 122.1 176 47.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 4.2e-22 112.5 429 30.1
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.3e-19 102.4 74 64.9
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 2.0e-16 93.6 1238 26.0
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 2.5e-11 76.6 74 59.5
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 3.1e-09 69.7 181 38.1
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.3e-07 64.3 128 41.4
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 2.9e-07 63.2 302 28.5
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.4e-06 60.8 56 55.4


User provided reference genes

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