Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 2.5e-116 422.2 221 100.0
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 5.5e-103 377.9 221 88.2
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 1.2e-86 323.6 204 81.9
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 8.7e-85 317.4 222 73.9
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 1.9e-84 316.2 221 74.2
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 8.2e-83 310.8 216 75.0
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 3.8e-72 275.4 218 69.3
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 1.1e-71 273.9 225 68.9
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 2.1e-70 269.6 209 71.8
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 2.8e-59 232.6 183 68.3
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 2.8e-59 232.6 183 68.3
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 4.2e-55 218.8 197 61.9
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 2.7e-46 189.5 213 50.7
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 2.6e-44 183.0 212 48.1
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 4.9e-43 178.7 207 51.7
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.1e-42 177.6 224 46.9
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 2.4e-42 176.4 204 47.5
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 5.4e-42 175.3 222 45.0
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 7.0e-42 174.9 230 48.3
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 9.2e-42 174.5 211 46.4
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 2.0e-41 173.3 209 47.4
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 4.5e-41 172.2 215 45.1
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 4.5e-41 172.2 218 45.0
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.3e-40 170.6 213 44.6
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 1.3e-40 170.6 209 47.4
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.7e-40 170.2 199 47.7
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.9e-40 169.5 195 46.7
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 3.8e-40 169.1 213 47.9
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 3.8e-40 169.1 206 46.1
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 6.6e-40 168.3 225 44.0
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 6.6e-40 168.3 225 44.0
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 6.6e-40 168.3 229 44.1
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.1e-39 167.5 214 44.4
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 1.5e-39 167.2 208 46.2
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 2.5e-39 166.4 203 46.3
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 3.3e-39 166.0 219 47.0
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 3.3e-39 166.0 222 45.5
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 4.3e-39 165.6 214 46.3
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 4.3e-39 165.6 213 44.1
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 1.2e-38 164.1 204 45.6
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 1.2e-38 164.1 219 43.8
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 1.2e-38 164.1 203 46.3
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 2.1e-38 163.3 214 45.3
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 4.7e-38 162.2 209 45.0
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 4.7e-38 162.2 219 42.0
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 8.0e-38 161.4 208 45.7
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 1.4e-37 160.6 208 46.2
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 1.8e-37 160.2 206 48.1
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 2.3e-37 159.8 201 45.8
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 3.0e-37 159.5 206 43.7
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 3.0e-37 159.5 201 47.8
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 5.2e-37 158.7 211 45.5
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 8.9e-37 157.9 209 43.1
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 8.9e-37 157.9 195 47.2
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 8.9e-37 157.9 218 44.5
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 8.9e-37 157.9 203 43.8
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 1.5e-36 157.1 160 56.2
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 2.6e-36 156.4 159 56.0
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 2.6e-36 156.4 205 42.4
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 3.4e-36 156.0 207 44.9
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 7.5e-36 154.8 204 42.6
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 1.3e-35 154.1 208 45.7
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 2.2e-35 153.3 197 43.1
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 1.4e-34 150.6 203 42.9
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 1.8e-34 150.2 210 39.5
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 3.2e-34 149.4 210 44.8
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 5.4e-34 148.7 204 43.6
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 7.0e-34 148.3 200 44.5
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 2.0e-33 146.7 196 46.9
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 2.0e-33 146.7 200 42.0
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.0e-33 146.7 200 44.0
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 2.7e-33 146.4 141 51.1
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 3.5e-33 146.0 207 41.5
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 4.6e-33 145.6 177 45.8
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 1.0e-32 144.4 160 46.2
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 3.0e-32 142.9 193 43.5
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 5.0e-32 142.1 199 44.2
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 6.6e-32 141.7 209 41.1
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.5e-31 140.6 198 43.9
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 1.2e-30 137.5 213 41.3
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 2.8e-30 136.3 208 39.4
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 3.1e-29 132.9 200 39.0
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 4.0e-29 132.5 234 36.3
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 4.0e-29 132.5 202 41.6
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 1.5e-28 130.6 243 37.9
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 3.4e-28 129.4 155 46.5
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.1e-26 124.4 193 39.4
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 1.1e-26 124.4 218 38.5
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 7.0e-26 121.7 178 40.4
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 9.2e-26 121.3 112 56.2
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 1.1e-23 114.4 204 37.7
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 1.1e-23 114.4 303 31.7
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 1.6e-22 110.5 135 51.1
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 2.1e-22 110.2 213 34.3
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 1.2e-17 94.4 188 34.6
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 6.0e-17 92.0 98 50.0
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 3.9e-16 89.4 145 42.1
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 3.3e-15 86.3 147 37.4
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 7.3e-15 85.1 180 32.2
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 2.3e-13 80.1 132 40.9
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 3.1e-13 79.7 92 48.9
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 1.5e-12 77.4 183 32.8
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.4e-10 70.1 125 40.0
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 7.1e-10 68.6 231 30.3
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 7.8e-09 65.1 163 30.7
Mapoly0001s0294 Marchantia polymorpha HOM05D006223 ORTHO05D009080 2.1e-06 57.0 218 28.9


User provided reference genes

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