Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.2e-93 346.3 275 100.0
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.9e-89 333.2 279 96.8
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 6.8e-87 324.7 272 95.6
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 6.4e-85 318.2 279 93.5
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 9.2e-84 314.3 272 94.1
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 4.3e-81 305.4 278 91.4
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 5.6e-81 305.1 278 91.4
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.2e-80 303.9 278 91.0
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.1e-80 303.1 273 92.3
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.7e-80 302.0 278 91.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 3.1e-79 299.3 281 90.4
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 6.8e-79 298.1 273 91.6
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 6.8e-79 298.1 273 91.6
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 8.9e-79 297.7 281 90.0
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 8.9e-79 297.7 281 90.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.3e-77 293.9 268 93.3
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-77 293.5 280 90.0
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.8e-72 276.2 271 87.5
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.7e-69 266.9 272 86.0
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 2.2e-69 266.5 273 86.1
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 4.9e-69 265.4 273 84.6
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.2e-67 260.8 275 85.5
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.0e-66 257.7 273 85.0
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.0e-66 257.7 272 84.2
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 7.3e-65 251.5 272 82.7
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 9.6e-65 251.1 272 82.7
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 9.6e-65 251.1 272 82.4
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 9.6e-65 251.1 272 82.7
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 6.2e-64 248.4 272 82.0
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 2.4e-63 246.5 268 82.5
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.2e-62 244.2 272 80.9
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 9.9e-62 241.1 271 80.1
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 3.8e-61 239.2 268 81.7
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 6.4e-61 238.4 268 73.1
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-60 236.9 270 82.6
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 7.1e-60 235.0 268 81.0
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.3e-60 234.6 269 82.2
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 9.3e-60 234.6 269 82.2
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.2e-59 234.2 268 80.6
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 6.0e-59 231.9 274 77.7
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 7.9e-59 231.5 268 78.4
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.9e-59 231.5 268 79.9
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-58 231.1 268 80.2
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.0e-58 231.1 268 80.2
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.9e-58 229.2 270 79.3
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 8.7e-58 228.0 268 80.2
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 8.7e-58 228.0 268 79.1
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.7e-58 228.0 268 79.1
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.9e-57 226.9 268 78.7
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.9e-57 226.9 271 79.7
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 2.5e-57 226.5 270 79.3
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 2.5e-57 226.5 268 78.4
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 2.5e-57 226.5 268 78.7
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.6e-57 225.3 269 79.2
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 7.3e-57 224.9 267 78.7
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 9.6e-57 224.6 273 78.4
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.3e-56 224.2 268 77.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.3e-56 224.2 267 78.7
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-56 224.2 267 77.2
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.6e-56 223.8 266 78.2
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.6e-56 223.8 269 77.3
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.6e-56 223.8 260 80.4
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 2.1e-56 223.4 266 77.8
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 3.6e-56 222.6 267 79.4
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.6e-56 222.6 254 81.9
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 3.6e-56 222.6 268 76.5
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 4.8e-56 222.2 273 77.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.2e-56 221.9 269 77.7
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.8e-55 220.3 269 77.3
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.4e-55 219.9 267 78.7
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.4e-55 219.9 263 79.1
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 6.9e-55 218.4 267 78.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 6.9e-55 218.4 268 78.7
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.2e-54 217.6 268 77.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.2e-54 217.6 269 76.6
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.5e-54 217.2 268 79.1
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 77.3
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 77.3
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 3.4e-54 216.1 268 78.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 3.4e-54 216.1 268 78.0
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 5.8e-54 215.3 268 73.1
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.3e-53 214.2 268 75.4
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.9e-53 213.0 268 70.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 4.9e-53 212.2 267 76.8
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.9e-53 212.2 270 78.5
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.4e-52 209.9 270 74.8
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.4e-52 209.9 259 76.8
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.2e-52 209.5 269 75.8
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 3.2e-52 209.5 269 75.8
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 4.2e-52 209.1 270 77.8
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 9.3e-52 208.0 268 73.5
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.2e-51 207.6 268 75.0
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 3.5e-51 206.1 271 75.6
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 4.6e-51 205.7 270 74.8
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 6.0e-51 205.3 270 75.2
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.8e-50 203.8 270 74.4
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.8e-50 203.8 268 74.3
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-50 203.0 272 62.9
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.9e-50 202.6 266 74.4
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 3.9e-50 202.6 269 74.3
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 6.7e-50 201.8 269 75.1
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.5e-49 200.7 271 74.2
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.9e-49 200.3 266 72.2
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.9e-49 200.3 252 78.2
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 2.5e-49 199.9 231 85.7
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 5.6e-49 198.7 266 72.6
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 5.6e-49 198.7 266 72.6
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 9.6e-49 198.0 245 80.0
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.6e-48 197.2 271 73.1
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.1e-48 196.8 271 49.1
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.1e-48 196.8 266 69.9
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.8e-48 196.4 266 74.8
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 3.7e-48 196.1 279 72.8
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 8.1e-48 194.9 252 75.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.4e-47 194.1 255 74.9
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.8e-47 193.7 259 76.8
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.5e-46 190.7 270 75.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.6e-46 189.9 255 74.9
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.5e-46 189.1 269 73.6
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 4.5e-46 189.1 268 73.9
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 5.8e-46 188.7 266 74.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.8e-45 186.0 275 73.8
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 3.8e-45 186.0 270 72.2
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.4e-44 184.1 242 79.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 3.2e-44 183.0 275 63.6
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.6e-43 180.6 231 82.3
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.6e-43 180.6 269 71.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.1e-43 180.3 252 74.2
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 3.5e-43 179.5 255 69.4
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 3.5e-43 179.5 276 73.6
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.3e-42 177.6 271 72.3
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 3.9e-42 176.0 255 71.4
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.7e-42 175.3 279 39.8
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 8.7e-42 174.9 239 80.3
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 8.7e-42 174.9 259 71.8
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.5e-41 173.3 261 70.9
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 7.4e-41 171.8 254 73.6
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.2e-40 168.3 231 80.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 8.2e-40 168.3 230 80.4
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-39 167.9 230 80.0
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 8.4e-37 158.3 214 82.2
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-33 147.5 250 72.4
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 9.7e-33 144.8 212 79.7
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.4e-30 136.3 80 77.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 5.5e-28 129.0 87 74.7
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.4e-26 124.4 215 77.2
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 3.0e-26 123.2 274 62.8
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.7e-26 122.1 95 64.2
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 2.2e-24 117.1 267 52.1
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.8e-24 116.7 274 62.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 8.2e-24 115.2 254 59.8
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.1e-23 114.8 88 64.8
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.2e-21 107.1 83 63.9
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 4.7e-19 99.4 87 62.1
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.4e-17 92.8 84 58.3
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.1e-11 73.9 59 64.4
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 8.0e-11 72.0 72 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 4.1e-07 59.7 237 58.2
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.3e-07 59.3 53 49.1
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 7.0e-07 58.9 93 36.6
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 5.9e-06 55.8 105 32.4


User provided reference genes

Program Settings