Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.8e-129 465.3 242 100.0
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.8e-107 392.9 230 90.4
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 1.4e-99 366.7 210 91.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 3.5e-95 352.1 225 81.3
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 4.6e-95 351.7 225 82.2
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 8.6e-94 347.4 225 83.1
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 5.2e-91 338.2 222 81.1
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 2.4e-88 329.3 225 78.2
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 4.6e-87 325.1 235 74.5
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 4.6e-87 325.1 235 74.5
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 5.1e-86 321.6 235 71.9
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 3.3e-85 318.9 235 73.2
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 3.3e-85 318.9 235 73.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 5.6e-85 318.2 222 76.1
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 1.4e-83 313.5 225 75.6
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 1.3e-81 307.0 255 65.5
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 8.4e-81 304.3 228 69.7
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 9.3e-80 300.8 221 73.3
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 3.3e-77 292.4 217 72.4
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.2e-74 283.9 229 66.4
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 4.5e-74 282.0 214 71.5
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.2e-71 273.9 205 72.2
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 5.1e-70 268.5 226 67.3
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 2.9e-65 252.7 237 59.1
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.9e-64 250.0 209 66.0
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.4e-59 233.8 228 54.8
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 9.0e-59 231.1 230 53.0
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 9.0e-59 231.1 230 53.0
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.6e-58 229.6 220 55.0
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 1.6e-55 220.3 228 52.6
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.6e-55 220.3 225 53.8
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 4.6e-55 218.8 229 51.1
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 3.0e-54 216.1 241 49.0
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 4.3e-53 212.2 228 51.3
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.2e-52 209.9 221 53.8
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.8e-51 206.8 230 49.1
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 4.1e-51 205.7 232 47.0
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.0e-49 201.1 231 49.8
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.0e-49 201.1 221 48.0
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.3e-49 200.7 221 49.8
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.3e-49 200.7 229 46.7
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.2e-49 199.9 220 51.8
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.5e-49 198.4 232 47.8
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.1e-48 197.6 221 49.3
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.1e-48 197.6 217 47.5
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.1e-48 197.6 225 45.8
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.9e-48 196.8 218 51.4
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 2.5e-48 196.4 228 47.8
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 3.2e-48 196.1 217 48.8
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 2.1e-47 193.4 221 46.6
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 2.1e-47 193.4 219 48.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.7e-47 193.0 224 46.9
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 6.1e-47 191.8 241 44.8
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 1.0e-46 191.0 230 46.5
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 1.4e-46 190.7 228 45.2
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.9e-46 189.1 227 46.3
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.1e-45 187.6 217 46.5
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 1.3e-44 184.1 213 45.5
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.7e-44 183.7 228 44.3
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 2.2e-44 183.3 218 46.3
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 6.3e-44 181.8 225 44.4
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.1e-43 181.0 214 47.7
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.4e-43 179.9 221 42.1
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 2.4e-43 179.9 229 44.1
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.1e-43 179.1 227 44.1
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.2e-42 177.6 218 49.5
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 4.5e-42 175.6 219 46.1
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 5.9e-42 175.3 225 42.7
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 7.7e-42 174.9 230 43.0
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.0e-41 174.5 234 44.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.3e-41 174.1 211 45.5
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.3e-41 174.1 130 76.9
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.9e-41 172.9 216 44.0
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 3.8e-41 172.6 224 43.8
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.0e-41 172.2 215 44.2
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.0e-41 172.2 225 40.9
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 1.4e-40 170.6 204 45.6
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 2.5e-40 169.9 221 43.4
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.2e-40 169.5 229 42.4
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 3.2e-40 169.5 240 40.8
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 4.2e-40 169.1 223 40.8
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 7.2e-40 168.3 236 43.2
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 7.2e-40 168.3 229 41.0
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 9.4e-40 167.9 229 45.0
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.6e-39 167.2 232 42.2
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 7.9e-39 164.9 246 40.2
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.8e-38 163.7 216 43.1
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.8e-38 163.7 189 49.2
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.0e-38 162.9 204 43.1
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.1e-38 162.2 215 42.8
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 1.1e-37 161.0 208 43.8
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.5e-37 160.6 220 40.5
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.0e-37 160.2 202 44.1
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 2.6e-37 159.8 231 39.0
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 3.3e-37 159.5 223 43.0
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 4.4e-37 159.1 261 36.0
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.7e-37 157.9 212 40.6
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.3e-36 157.5 231 41.1
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 8.2e-36 154.8 234 41.0
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.8e-35 153.7 245 40.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.2e-33 146.7 237 38.4
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 2.9e-33 146.4 222 39.6
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 1.9e-32 143.7 224 36.2
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 9.4e-32 141.4 216 38.9
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.7e-31 139.0 176 45.5
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 6.1e-31 138.7 219 34.7
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 4.0e-30 136.0 229 38.0
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.5e-29 134.0 203 36.9
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 5.7e-29 132.1 184 42.4
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.8e-28 129.8 241 35.7
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 3.7e-28 129.4 202 42.1
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.2e-26 124.4 222 36.5
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.2e-26 124.4 222 36.5
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 4.5e-26 122.5 135 51.9
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.3e-25 120.9 236 33.1
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 3.8e-25 119.4 220 32.7
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 6.5e-25 118.6 112 54.5
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.1e-24 117.9 220 35.9
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.9e-24 117.1 272 32.0
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.9e-24 117.1 136 47.1
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 3.2e-24 116.3 224 36.2
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.6e-23 114.0 237 34.6
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 3.6e-23 112.8 204 30.4
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 3.6e-23 112.8 166 41.0
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.8e-22 110.5 179 33.0
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.8e-22 108.6 242 34.7
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 2.8e-20 103.2 78 62.8
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.4e-19 100.1 224 29.0
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.0e-18 97.1 82 57.3
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 2.0e-18 97.1 66 60.6
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.1e-16 91.3 174 32.2
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.5e-16 90.9 122 41.8
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.9e-16 90.5 95 42.1
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 5.5e-16 89.0 131 42.0
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 8.8e-14 81.6 56 66.1
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 8.8e-14 81.6 56 66.1
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 4.4e-13 79.3 86 46.5
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 2.4e-11 73.6 117 42.7
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 7.0e-11 72.0 77 46.8
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.2e-10 71.2 76 40.8
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 4.5e-10 69.3 123 32.5
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 6.6e-09 65.5 157 33.1
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 2.5e-08 63.5 234 26.1
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 2.5e-08 63.5 98 38.8
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.8e-06 57.4 213 24.4


User provided reference genes

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