Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 7.2e-83 310.5 148 100.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.8e-71 271.9 150 91.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 3.4e-69 265.0 150 89.3
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.7e-68 262.7 150 88.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 4.2e-67 258.1 150 88.0
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.6e-66 255.0 150 87.3
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.7e-66 254.6 150 84.7
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 2.8e-63 245.4 147 83.7
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.4e-62 243.0 151 83.4
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.8e-62 242.7 151 82.8
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 3.1e-62 241.9 151 82.1
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 3.1e-62 241.9 134 88.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 3.1e-62 241.9 151 82.1
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 4.1e-62 241.5 151 81.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 4.1e-62 241.5 151 81.5
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.2e-61 240.0 141 85.1
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.9e-60 235.3 151 82.1
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.5e-59 233.0 153 81.0
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.5e-59 233.0 153 81.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 4.2e-59 231.5 150 76.7
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 4.2e-59 231.5 153 80.4
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.2e-58 229.9 153 79.7
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.6e-58 228.4 150 78.7
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 4.7e-58 228.0 151 76.2
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 6.1e-58 227.6 151 76.2
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.0e-57 226.9 152 73.7
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.8e-57 226.1 150 73.3
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 5.2e-57 224.6 151 76.8
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 5.2e-57 224.6 151 76.8
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.7e-57 224.2 150 72.7
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 8.8e-57 223.8 149 72.5
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.2e-56 223.4 150 73.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 3.3e-56 221.9 154 77.9
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 73.3
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 73.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 3.3e-56 221.9 150 73.3
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.7e-55 219.5 151 72.2
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.7e-55 219.5 151 71.5
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.2e-55 219.2 150 72.7
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.2e-55 219.2 150 72.7
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 2.2e-55 219.2 150 71.3
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.8e-55 218.8 150 72.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 3.7e-55 218.4 150 70.7
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 3.7e-55 218.4 150 69.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 6.3e-55 217.6 152 73.7
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 6.3e-55 217.6 150 71.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 8.2e-55 217.2 151 74.8
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 8.2e-55 217.2 151 74.8
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 8.2e-55 217.2 151 74.8
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 8.2e-55 217.2 150 72.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 8.2e-55 217.2 150 71.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.1e-54 216.9 150 74.0
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-54 216.5 152 75.7
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 72.7
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.4e-54 216.5 150 70.7
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 72.0
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 72.0
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 1.8e-54 216.1 150 70.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 2.4e-54 215.7 150 71.3
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 3.1e-54 215.3 136 75.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.1e-54 215.3 150 70.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 3.1e-54 215.3 150 71.3
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 5.3e-54 214.5 151 74.2
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 70.0
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 5.3e-54 214.5 151 70.9
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 71.3
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 5.3e-54 214.5 150 69.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 7.0e-54 214.2 151 74.2
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 7.0e-54 214.2 150 69.3
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 7.0e-54 214.2 150 70.0
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.2e-53 213.4 149 69.1
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.2e-53 213.4 150 70.0
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.2e-53 213.4 150 70.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.6e-53 213.0 150 70.7
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.6e-53 213.0 150 68.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.0e-53 212.6 150 70.0
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.0e-53 212.6 142 73.9
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 2.0e-53 212.6 151 72.2
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 2.7e-53 212.2 150 71.3
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.7e-53 212.2 150 70.7
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.5e-53 211.8 150 68.7
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.5e-53 211.8 150 68.7
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 5.9e-53 211.1 150 70.0
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 7.7e-53 210.7 145 66.9
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.7e-53 210.7 150 68.7
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 7.7e-53 210.7 155 69.0
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 7.7e-53 210.7 150 68.7
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.0e-52 210.3 138 71.0
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.3e-52 209.9 140 73.6
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.7e-52 209.5 150 70.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.7e-52 209.5 150 69.3
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 2.2e-52 209.1 151 68.2
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.2e-52 209.1 150 68.0
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 2.9e-52 208.8 142 70.4
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.8e-52 208.4 142 68.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 3.8e-52 208.4 150 68.7
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.0e-52 208.0 150 68.0
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 6.5e-52 207.6 150 68.7
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 8.5e-52 207.2 150 67.3
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.5e-52 207.2 150 68.7
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.5e-52 207.2 150 68.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-51 206.8 149 73.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-51 206.8 149 73.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-51 206.8 149 73.2
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 69.3
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.5e-51 206.5 142 67.6
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.5e-51 206.5 150 70.7
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.5e-51 206.5 151 72.2
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 1.9e-51 206.1 149 68.5
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 2.5e-51 205.7 150 68.7
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 3.2e-51 205.3 150 67.3
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 4.2e-51 204.9 150 69.3
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 5.5e-51 204.5 150 66.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 7.2e-51 204.1 150 67.3
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 9.4e-51 203.8 150 67.3
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.2e-50 203.4 150 67.3
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.1e-50 202.6 150 66.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 2.7e-50 202.2 133 75.2
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.7e-50 202.2 134 72.4
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 3.6e-50 201.8 150 66.7
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 3.6e-50 201.8 151 68.2
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.7e-50 201.4 142 66.2
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 4.7e-50 201.4 150 66.0
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 4.7e-50 201.4 150 66.7
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.0e-49 200.3 134 71.6
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.0e-49 200.3 134 71.6
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.4e-49 199.9 154 66.9
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.8e-49 199.5 146 67.8
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.3e-49 199.1 150 67.3
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.5e-48 196.4 142 65.5
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.5e-48 196.4 148 62.8
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 6.3e-47 191.0 150 61.3
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 8.3e-47 190.7 128 71.9
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 4.1e-46 188.3 104 91.3
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 9.1e-46 187.2 150 63.3
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.2e-45 186.8 150 60.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 5.9e-45 184.5 135 69.6
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 2.3e-44 182.6 150 60.7
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.6e-44 180.6 118 71.2
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.6e-42 176.4 134 64.2
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 8.0e-42 174.1 150 61.3
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.8e-41 172.9 125 68.0
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 5.7e-40 167.9 150 60.0
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.6e-34 148.7 148 58.1
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.4e-33 146.7 104 69.2
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.8e-32 140.6 148 55.4
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 3.2e-30 135.6 150 52.7
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 4.1e-30 135.2 150 47.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 7.0e-30 134.4 99 69.7
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.9e-27 126.3 123 53.7
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 9.8e-24 114.0 145 42.1
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.3e-23 113.6 130 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.2e-18 97.1 96 47.9
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 6.8e-17 91.3 70 70.0
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 7.1e-14 81.3 78 59.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 3.1e-09 65.9 85 36.5


User provided reference genes

Program Settings