Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 0.0e+00 1104.4 561 100.0
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 5.6e-301 1036.9 563 94.3
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.7e-289 998.8 563 89.7
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 7.1e-288 993.4 562 90.4
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 7.7e-274 946.8 573 84.1
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 2.9e-273 944.9 571 84.1
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 3.8e-273 944.5 571 83.9
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 2.0e-269 932.2 562 84.3
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.7e-268 929.1 561 85.2
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-249 866.7 554 81.0
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 8.5e-249 863.6 554 80.7
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.7e-242 842.0 559 74.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 2.9e-241 838.6 559 73.9
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.6e-239 832.8 559 75.3
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 3.0e-238 828.6 556 76.4
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.2e-236 822.4 559 75.8
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 2.8e-236 822.0 553 74.1
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 2.3e-233 812.4 566 70.0
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 8.6e-225 783.9 563 70.3
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.8e-223 778.9 558 72.2
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-220 769.2 562 73.0
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 4.6e-218 761.5 566 71.2
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 3.6e-215 751.9 562 71.0
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 5.8e-213 744.6 562 70.5
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.2e-212 742.7 568 70.1
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.6e-210 734.9 575 68.9
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 3.8e-196 688.7 556 66.5
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 6.4e-180 634.8 585 54.5
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.4e-166 589.7 587 51.1
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.6e-159 567.0 565 50.4
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.2e-159 566.6 568 51.2
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 8.2e-159 564.7 568 50.7
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.4e-158 563.9 590 47.8
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 1.4e-158 563.9 600 48.7
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 9.0e-158 561.2 596 48.7
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.6e-157 559.7 596 47.8
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.6e-157 559.7 582 48.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 2.6e-157 559.7 567 51.5
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 2.9e-156 556.2 584 49.3
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.4e-155 553.9 656 44.8
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.9e-155 553.5 586 49.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 3.2e-155 552.7 588 51.5
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 2.7e-154 549.7 565 50.8
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 3.6e-154 549.3 599 50.3
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.0e-152 543.5 559 51.2
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 2.0e-152 543.5 573 48.2
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-152 542.7 609 48.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.3e-152 542.3 565 48.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.4e-149 532.7 586 47.1
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 7.7e-149 531.6 573 49.4
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.7e-148 530.4 590 47.1
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.2e-148 530.0 610 47.0
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-147 527.3 580 46.9
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 9.4e-147 524.6 570 47.0
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.4e-145 520.8 586 46.4
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 8.8e-145 518.1 567 47.6
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 1.1e-144 517.7 564 47.7
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 5.7e-144 515.4 569 46.9
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.8e-142 510.4 611 46.2
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-142 510.0 405 64.2
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.0e-141 506.9 575 49.0
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.9e-139 500.4 626 44.7
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.2e-139 499.2 284 89.8
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 4.2e-139 499.2 564 46.5
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.6e-138 497.3 617 45.2
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.7e-138 496.5 582 47.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 4.7e-138 495.7 564 46.5
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 6.1e-138 495.4 606 47.0
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.0e-136 490.3 581 45.6
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.4e-136 489.2 457 53.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 9.7e-136 488.0 574 45.8
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.1e-134 483.0 597 44.9
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 7.0e-134 481.9 605 45.0
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.6e-133 480.7 650 43.8
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.5e-133 479.6 592 44.6
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 5.9e-133 478.8 582 44.7
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.8e-132 476.1 586 44.5
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 8.5e-132 474.9 611 45.8
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 8.0e-130 468.4 632 42.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.8e-127 459.9 476 47.7
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.3e-127 458.8 479 47.8
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.4e-126 456.8 604 42.1
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 3.5e-125 453.0 549 45.2
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.7e-124 450.7 468 47.6
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 5.0e-124 449.1 626 42.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 6.5e-124 448.7 573 41.4
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 8.5e-124 448.4 628 42.0
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-123 448.0 468 47.4
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 6.1e-122 442.2 653 40.6
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 5.2e-121 439.1 611 41.2
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.2e-121 439.1 611 41.2
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 9.8e-120 434.9 478 46.2
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.2e-119 433.7 662 38.1
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.5e-115 421.0 424 47.6
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 5.6e-115 419.1 483 44.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 8.9e-113 411.8 225 89.8
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 1.5e-112 411.0 437 49.2
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 6.4e-111 405.6 295 68.5
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 8.3e-111 405.2 566 42.6
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.6e-109 401.0 604 39.1
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 3.3e-107 393.3 292 69.2
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.6e-106 391.0 561 41.0
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.1e-106 390.6 558 40.3
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 6.4e-103 379.0 481 42.0
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-102 378.3 485 42.7
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.1e-98 364.0 577 40.9
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 6.2e-98 362.5 482 42.5
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 7.1e-94 349.0 476 43.9
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 4.3e-91 339.7 423 40.0
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 4.3e-91 339.7 416 40.6
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 5.8e-88 329.3 664 35.1
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.3e-87 328.2 505 37.2
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 1.9e-86 324.3 339 46.9
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.5e-83 314.7 428 39.7
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 4.3e-83 313.2 349 47.3
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 9.6e-83 312.0 345 46.1
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 8.1e-82 308.9 451 37.3
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.9e-79 300.4 352 43.5
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.3e-76 290.8 357 44.0
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 5.4e-70 269.6 317 46.1
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 1.6e-69 268.1 271 48.0
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 9.9e-64 248.8 242 51.2
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 6.4e-63 246.1 232 49.6
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 2.4e-57 227.6 342 40.1
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.5e-56 224.9 242 49.2
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.1e-54 216.1 267 42.3
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.1e-53 214.5 274 44.5
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.2e-50 202.6 233 44.6
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.5e-48 196.8 158 56.3
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 6.5e-47 193.0 132 64.4
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.1e-46 192.2 235 44.3
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.2e-46 189.5 254 49.2
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 5.3e-41 173.3 251 41.4
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.9e-41 172.9 308 33.8
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 2.6e-40 171.0 402 34.3
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.5e-38 164.5 147 54.4
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.8e-31 140.6 182 40.1
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.5e-31 139.8 164 41.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 6.5e-31 139.8 186 41.9
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.4e-30 138.7 182 40.1
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 4.2e-30 137.1 229 40.6
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-29 135.6 182 39.6
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 3.6e-29 134.0 183 40.4
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-28 131.3 182 40.1
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-28 131.3 182 40.1
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-28 131.3 182 40.1
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.3e-26 125.6 399 25.3
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.2e-26 124.8 102 55.9
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.1e-25 122.5 134 45.5
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.8e-25 121.7 196 36.7
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.7e-24 116.3 254 33.9
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 3.8e-23 114.0 114 50.9
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.5e-23 112.8 229 36.7
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-22 112.5 104 51.0
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 5.5e-22 110.2 97 52.6
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 8.0e-21 106.3 129 44.2
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 1.0e-20 105.9 103 49.5
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 1.5e-19 102.1 65 72.3
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.3e-18 99.0 185 34.6
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 4.8e-18 97.1 107 41.1
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.1e-17 95.9 82 50.0
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.5e-14 84.7 69 50.7
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.2e-14 84.3 194 41.2
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 4.7e-13 80.5 263 32.7
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.0e-13 79.7 83 45.8
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 6.8e-12 76.6 78 47.4
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.7e-10 72.0 170 35.3
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.7e-10 70.9 94 46.8
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 3.7e-10 70.9 200 34.0
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.7e-10 70.9 43 72.1
BolC8t48198H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-09 68.9 35 85.7
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.5e-08 63.9 50 58.0
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 5.9e-08 63.5 99 42.4
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.5e-06 58.2 47 59.6
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 3.2e-06 57.8 81 40.7


User provided reference genes

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