Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G49155 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 4.0e-69 264.6 132 100.0
AL5G28850 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 4.4e-23 111.7 123 52.8
THA.LOC104821365 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 2.3e-16 89.4 109 44.0
THA.LOC104821366 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.3e-14 83.6 121 43.0
RcHm_v2.0_Chr1g0359321 Rosa chinensis HOM05D002290 ORTHO05D002532 1.8e-13 79.7 93 50.5
Ca_18517_v3 Cicer arietinum L. HOM05D002290 ORTHO05D002532 5.3e-13 78.2 121 43.8
CARHR275840 Cardamine hirsuta HOM05D002290 ORTHO05D002532 1.2e-12 77.0 111 42.3
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.6e-12 76.6 105 43.8
Duzib068G0387 Durio zibethinus HOM05D002290 ORTHO05D002532 1.6e-12 76.6 96 50.0
Sc23g0002130 Simmondsia chinensis HOM05D002290 ORTHO05D002532 1.6e-12 76.6 105 43.8
TWI81G0556 Tripterygium wilfordii HOM05D002290 ORTHO05D002532 1.6e-12 76.6 117 40.2
CiPaw.11G121700 Carya illinoinensis HOM05D002290 ORTHO05D002532 2.0e-12 76.3 108 45.4
Eucgr.E00860 Eucalyptus grandis HOM05D002290 ORTHO05D002532 2.6e-12 75.9 113 43.4
Aa31LG11G1480 Aethionema arabicum HOM05D002290 ORTHO05D002532 3.5e-12 75.5 105 41.0
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 3.5e-12 75.5 118 41.5
TAR629G2459 Trochodendron aralioides HOM05D002290 ORTHO05D002532 5.9e-12 74.7 121 40.5
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 7.7e-12 74.3 118 41.5
AT5G62050 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 1.0e-11 73.9 106 41.5
CDE02G2069 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.0e-11 73.9 110 40.0
AUR62004481 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.0e-11 73.9 103 42.7
AUR62010838 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.0e-11 73.9 89 48.3
Thhalv10004275m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.3e-11 73.6 107 42.1
Manes.12G013800 Manihot esculenta HOM05D002290 ORTHO05D002532 1.3e-11 73.6 116 40.5
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 1.7e-11 73.2 109 40.4
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 1.7e-11 73.2 102 47.1
Aa31LG5G18540 Aethionema arabicum HOM05D002290 ORTHO05D002532 2.2e-11 72.8 117 36.8
Prupe.2G187000 Prunus persica HOM05D002290 ORTHO05D002532 2.2e-11 72.8 91 47.3
PGR042G3133 Punica granatum HOM05D002290 ORTHO05D002532 2.2e-11 72.8 113 43.4
Sp2g25220 Schrenkiella parvula HOM05D002290 ORTHO05D002532 2.2e-11 72.8 108 42.6
HPP92_021112 Vanilla planifolia HOM05D002290 ORTHO05D002532 2.2e-11 72.8 107 40.2
Haze_04372 Corylus avellana HOM05D002290 ORTHO05D002532 2.9e-11 72.4 108 46.3
Dinv38832 Davidia involucrata HOM05D002290 ORTHO05D002532 2.9e-11 72.4 104 44.2
MD07G1148500 Malus domestica HOM05D002290 ORTHO05D002532 2.9e-11 72.4 97 44.3
CANSAT21G2386 Cannabis sativa HOM05D002290 ORTHO05D002532 3.8e-11 72.0 114 40.4
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 5.0e-11 71.6 111 43.2
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 5.0e-11 71.6 96 46.9
Lj2g0019811 Lotus japonicus HOM05D002290 ORTHO05D002532 5.0e-11 71.6 113 41.6
Actinidia27317 Actinidia chinensis HOM05D002290 ORTHO05D002532 6.5e-11 71.2 116 38.8
Cfa006406 Carpinus fangiana HOM05D002290 ORTHO05D002532 6.5e-11 71.2 108 45.4
Cfa006407 Carpinus fangiana HOM05D002290 ORTHO05D002532 6.5e-11 71.2 108 45.4
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 6.5e-11 71.2 113 42.5
Gohir.A02G101200 Gossypium hirsutum HOM05D002290 ORTHO05D002532 8.5e-11 70.9 118 41.5
Rhsim07G0082400 Rhododendron simsii HOM05D002290 ORTHO05D002532 8.5e-11 70.9 108 43.5
TAR375G0429 Trochodendron aralioides HOM05D002290 ORTHO05D002532 8.5e-11 70.9 121 39.7
EL10Ac5g12913 Beta vulgaris HOM05D002290 ORTHO05D002532 1.1e-10 70.5 108 38.0
Carub.0008s2273 Capsella rubella HOM05D002290 ORTHO05D002532 1.1e-10 70.5 118 37.3
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.1e-10 70.5 113 40.7
Sed0023168 Sechium edule HOM05D002290 ORTHO05D002532 1.1e-10 70.5 111 43.2
PGR042G2044 Punica granatum HOM05D002290 ORTHO05D002532 1.5e-10 70.1 108 42.6
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 1.5e-10 70.1 113 41.6
A06p28750 Brassica napus HOM05D002290 ORTHO05D002532 1.9e-10 69.7 117 42.7
Sc01g0010300 Simmondsia chinensis HOM05D002290 ORTHO05D002532 2.5e-10 69.3 109 41.3
TPR.G12131 Trifolium pratense HOM05D002290 ORTHO05D002532 2.5e-10 69.3 122 38.5
Aqoxy5G04225 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 3.2e-10 68.9 67 58.2
AL8G38820 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 3.2e-10 68.9 106 39.6
BraA06t25816Z Brassica rapa HOM05D002290 ORTHO05D002532 3.2e-10 68.9 118 42.4
CSS0016367 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 3.2e-10 68.9 105 42.9
CSS0049945 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 3.2e-10 68.9 105 42.9
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 3.2e-10 68.9 108 42.6
Hma1.2p1_0359F.1_g135260 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 3.2e-10 68.9 117 38.5
Lj8A208G55 Lonicera japonica HOM05D002290 ORTHO05D002532 3.2e-10 68.9 104 42.3
Phvul.002G225801 Phaseolus vulgaris HOM05D002290 ORTHO05D002532 3.2e-10 68.9 118 40.7
THA.LOC104821813 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 3.2e-10 68.9 111 42.3
Actinidia22155 Actinidia chinensis HOM05D002290 ORTHO05D002532 4.2e-10 68.6 105 43.8
CSS0030360 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 4.2e-10 68.6 105 42.9
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 4.2e-10 68.6 89 44.9
Gohir.D11G024800 Gossypium hirsutum HOM05D002290 ORTHO05D002532 4.2e-10 68.6 109 38.5
Lalb_Chr25g0283581 Lupinus albus HOM05D002290 ORTHO05D002532 4.2e-10 68.6 127 38.6
C03p64900 Brassica napus HOM05D002290 ORTHO05D002532 5.5e-10 68.2 96 44.8
BolC3t18752H Brassica oleracea HOM05D002290 ORTHO05D002532 5.5e-10 68.2 96 44.8
AUR62023472 Chenopodium quinoa HOM05D002290 ORTHO05D002532 5.5e-10 68.2 96 42.7
AUR62023535 Chenopodium quinoa HOM05D002290 ORTHO05D002532 5.5e-10 68.2 96 42.7
Dinv37532 Davidia involucrata HOM05D002290 ORTHO05D002532 5.5e-10 68.2 91 47.3
Glyma.07G193700 Glycine max HOM05D002290 ORTHO05D002532 5.5e-10 68.2 114 41.2
QL02p030669 Quercus lobata HOM05D002290 ORTHO05D002532 5.5e-10 68.2 108 43.5
Cc00_g30690 Coffea canephora HOM05D002290 ORTHO05D002532 7.2e-10 67.8 112 42.9
Cc08_g16040 Coffea canephora HOM05D002290 ORTHO05D002532 7.2e-10 67.8 112 42.9
Gorai.007G026600 Gossypium raimondii HOM05D002290 ORTHO05D002532 7.2e-10 67.8 96 42.7
Lj2g0022324 Lotus japonicus HOM05D002290 ORTHO05D002532 7.2e-10 67.8 96 41.7
THA.LOC104821823 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 7.2e-10 67.8 111 41.4
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 9.4e-10 67.4 121 39.7
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 9.4e-10 67.4 91 46.2
Lalb_Chr20g0108181 Lupinus albus HOM05D002290 ORTHO05D002532 1.2e-09 67.0 127 37.8
Lalb_Chr25g0283571 Lupinus albus HOM05D002290 ORTHO05D002532 1.2e-09 67.0 113 40.7
Psat7g112000 Pisum sativum HOM05D002290 ORTHO05D002532 1.2e-09 67.0 113 41.6
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.6e-09 66.6 100 40.0
Hund14222 Selenicereus undatus HOM05D002290 ORTHO05D002532 1.6e-09 66.6 109 39.4
Ciclev10020194m.g Citrus clementina HOM05D002290 ORTHO05D002532 2.1e-09 66.2 118 36.4
Eucgr.E00058 Eucalyptus grandis HOM05D002290 ORTHO05D002532 2.1e-09 66.2 130 37.7
Gohir.D03G083100 Gossypium hirsutum HOM05D002290 ORTHO05D002532 2.1e-09 66.2 118 38.1
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 2.1e-09 66.2 112 42.0
Hund27202 Selenicereus undatus HOM05D002290 ORTHO05D002532 2.1e-09 66.2 105 41.9
Ah.13g065850 Amaranthus hybridus HOM05D002290 ORTHO05D002532 2.7e-09 65.9 106 40.6
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 2.7e-09 65.9 101 40.6
Medtr4g107330 Medicago truncatula HOM05D002290 ORTHO05D002532 2.7e-09 65.9 122 38.5
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 3.6e-09 65.5 91 45.1
Glyma.13G182900 Glycine max HOM05D002290 ORTHO05D002532 3.6e-09 65.5 114 43.0
Sopen08g004180 Solanum pennellii HOM05D002290 ORTHO05D002532 3.6e-09 65.5 118 36.4
Aqoxy7G00111 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 4.7e-09 65.1 105 41.0
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 4.7e-09 65.1 100 39.0
arahy.Tifrunner.gnm1.ann1.H71861 Arachis hypogaea HOM05D002290 ORTHO05D002532 6.1e-09 64.7 113 40.7
CARHR141770 Cardamine hirsuta HOM05D002290 ORTHO05D002532 6.1e-09 64.7 103 38.8
Gohir.A12G236300 Gossypium hirsutum HOM05D002290 ORTHO05D002532 6.1e-09 64.7 96 44.8
HanXRQChr17g0535271 Helianthus annuus HOM05D002290 ORTHO05D002532 6.1e-09 64.7 121 38.0
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 6.1e-09 64.7 100 41.0
VMungo0251G0742 Vigna mungo HOM05D002290 ORTHO05D002532 6.1e-09 64.7 123 41.5
GSVIVG01019529001 Vitis vinifera HOM05D002290 ORTHO05D002532 6.1e-09 64.7 106 40.6
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 8.0e-09 64.3 68 45.6
CAN.G792.39 Capsicum annuum HOM05D002290 ORTHO05D002532 8.0e-09 64.3 103 39.8
Gohir.D12G237500 Gossypium hirsutum HOM05D002290 ORTHO05D002532 8.0e-09 64.3 96 44.8
Gorai.008G254200 Gossypium raimondii HOM05D002290 ORTHO05D002532 8.0e-09 64.3 96 44.8
RcHm_v2.0_Chr7g0194921 Rosa chinensis HOM05D002290 ORTHO05D002532 8.0e-09 64.3 98 40.8
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 1.0e-08 63.9 65 50.8
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 1.0e-08 63.9 103 41.7
TPR.G38405 Trifolium pratense HOM05D002290 ORTHO05D002532 1.0e-08 63.9 124 37.1
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 1.4e-08 63.5 105 41.9
Prupe.5G118500 Prunus persica HOM05D002290 ORTHO05D002532 1.4e-08 63.5 121 34.7
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 1.8e-08 63.2 120 36.7
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.8e-08 63.2 110 40.9
Potri.018G140100 Populus trichocarpa HOM05D002290 ORTHO05D002532 2.3e-08 62.8 117 36.8
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 3.0e-08 62.4 120 35.8
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 3.0e-08 62.4 120 35.8
Potri.006G073000 Populus trichocarpa HOM05D002290 ORTHO05D002532 3.0e-08 62.4 112 37.5
Solyc08g008320.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 3.0e-08 62.4 118 35.6
PGSC0003DMG400005839 Solanum tuberosum HOM05D002290 ORTHO05D002532 3.0e-08 62.4 118 35.6
Aa31LG1G27800 Aethionema arabicum HOM05D002290 ORTHO05D002532 4.0e-08 62.0 109 33.9
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 5.2e-08 61.6 100 37.0
DCAR_005044 Daucus carota HOM05D002290 ORTHO05D002532 5.2e-08 61.6 109 36.7
FAN01G2053 Fragaria x ananassa HOM05D002290 ORTHO05D002532 5.2e-08 61.6 110 39.1
FAN06G0145 Fragaria x ananassa HOM05D002290 ORTHO05D002532 5.2e-08 61.6 110 39.1
FAN06G4253 Fragaria x ananassa HOM05D002290 ORTHO05D002532 5.2e-08 61.6 110 39.1
Gorai.003G080300 Gossypium raimondii HOM05D002290 ORTHO05D002532 5.2e-08 61.6 118 38.1
Ah.12g052540 Amaranthus hybridus HOM05D002290 ORTHO05D002532 6.7e-08 61.2 93 40.9
CiPaw.12G083300 Carya illinoinensis HOM05D002290 ORTHO05D002532 6.7e-08 61.2 65 49.2
FvH4_7g16310 Fragaria vesca HOM05D002290 ORTHO05D002532 6.7e-08 61.2 110 38.2
PGR042G1530 Punica granatum HOM05D002290 ORTHO05D002532 6.7e-08 61.2 69 47.8
arahy.Tifrunner.gnm1.ann1.R32419 Arachis hypogaea HOM05D002290 ORTHO05D002532 8.8e-08 60.8 100 41.0
Oeu009958.1 Olea europaea HOM05D002290 ORTHO05D002532 8.8e-08 60.8 114 36.0
Oeu034335.1 Olea europaea HOM05D002290 ORTHO05D002532 1.5e-07 60.1 66 48.5
RcHm_v2.0_Chr1g0378431 Rosa chinensis HOM05D002290 ORTHO05D002532 1.5e-07 60.1 58 55.2
Sabra01G0068200 Salix brachista HOM05D002290 ORTHO05D002532 1.5e-07 60.1 100 41.0
Sabra18G0114400 Salix brachista HOM05D002290 ORTHO05D002532 1.5e-07 60.1 117 35.0
ATR0763G065 Amborella trichopoda HOM05D002290 ORTHO05D002532 2.0e-07 59.7 98 37.8
FvH4_5g04530 Fragaria vesca HOM05D002290 ORTHO05D002532 2.0e-07 59.7 97 41.2
FAN18G0527 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.0e-07 59.7 97 41.2
FAN18G1754 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.0e-07 59.7 97 41.2
arahy.Tifrunner.gnm1.ann1.EY65RF Arachis hypogaea HOM05D002290 ORTHO05D002532 2.6e-07 59.3 96 40.6
ECA246G3661 Erigeron canadensis HOM05D002290 ORTHO05D002532 2.6e-07 59.3 66 43.9
FAN13G1635 Fragaria x ananassa HOM05D002290 ORTHO05D002532 2.6e-07 59.3 97 41.2
PSO063G5717 Papaver somniferum HOM05D002290 ORTHO05D002532 2.6e-07 59.3 108 38.0
PSO170G3987 Papaver somniferum HOM05D002290 ORTHO05D002532 2.6e-07 59.3 108 38.0
Peaxi162Scf00074g00928 Petunia axillaris HOM05D002290 ORTHO05D002532 2.6e-07 59.3 97 39.2
Thecc.03G297400 Theobroma cacao HOM05D002290 ORTHO05D002532 2.6e-07 59.3 104 39.4
Sabra06G0054400 Salix brachista HOM05D002290 ORTHO05D002532 3.3e-07 58.9 99 39.4
arahy.Tifrunner.gnm1.ann1.SMD748 Arachis hypogaea HOM05D002290 ORTHO05D002532 4.4e-07 58.5 73 46.6
FAN10G0122 Fragaria x ananassa HOM05D002290 ORTHO05D002532 4.4e-07 58.5 110 38.2
FAN10G3207 Fragaria x ananassa HOM05D002290 ORTHO05D002532 4.4e-07 58.5 110 38.2
Psat7g111880 Pisum sativum HOM05D002290 ORTHO05D002532 4.4e-07 58.5 100 43.0
SHI06993 Sapria himalayana HOM05D002290 ORTHO05D002532 4.4e-07 58.5 123 34.1
MSTRG.13884 Avicennia marina HOM05D002290 ORTHO05D002532 7.5e-07 57.8 104 37.5
Migut.E01251 Erythranthe guttata HOM05D002290 ORTHO05D002532 7.5e-07 57.8 64 46.9
FAN04G0835 Fragaria x ananassa HOM05D002290 ORTHO05D002532 7.5e-07 57.8 87 42.5
Os10g0521300 Oryza sativa ssp. japonica HOM05D002290 ORTHO05D002532 7.5e-07 57.8 96 35.4
Migut.E01249 Erythranthe guttata HOM05D002290 ORTHO05D002532 9.7e-07 57.4 57 50.9
FAN08G3549 Fragaria x ananassa HOM05D002290 ORTHO05D002532 9.7e-07 57.4 95 41.1
Medtr4g089105 Medicago truncatula HOM05D002290 ORTHO05D002532 9.7e-07 57.4 116 34.5
Os03g0116000 Oryza sativa ssp. japonica HOM05D002290 ORTHO05D002532 9.7e-07 57.4 51 52.9
arahy.Tifrunner.gnm1.ann1.X1WEHF Arachis hypogaea HOM05D002290 ORTHO05D002532 1.7e-06 56.6 100 38.0
Psat0s3860g0040 Pisum sativum HOM05D002290 ORTHO05D002532 2.2e-06 56.2 65 43.1
SalBow1G4018 Salvia bowleyana HOM05D002290 ORTHO05D002532 2.8e-06 55.8 114 35.1
Sopen08g030560 Solanum pennellii HOM05D002290 ORTHO05D002532 2.8e-06 55.8 110 34.5
THA.LOC104817356 Tarenaya hassleriana HOM05D002290 ORTHO05D012775 2.8e-06 55.8 60 46.7
Solyc08g082300.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 3.7e-06 55.5 108 36.1
MD06G1106300 Malus domestica HOM05D002290 ORTHO05D002532 4.8e-06 55.1 119 38.7
A05p01330 Brassica napus HOM05D011097 ORTHO05D012775 6.3e-06 54.7 111 31.5
BraA05t19131Z Brassica rapa HOM05D011097 ORTHO05D012775 6.3e-06 54.7 111 31.5
ECA248G0759 Erigeron canadensis HOM05D002290 ORTHO05D002532 6.3e-06 54.7 97 33.0
Thhalv10001729m.g Eutrema salsugineum HOM05D011097 ORTHO05D012775 6.3e-06 54.7 59 40.7
THA.LOC104817353 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 8.2e-06 54.3 55 45.5
Zm00001eb021300 Zea mays HOM05D002290 ORTHO05D002532 8.2e-06 54.3 51 49.0


User provided reference genes

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