Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 3.8e-166 588.2 316 100.0
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.4e-147 526.6 316 90.8
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 7.0e-144 514.2 317 88.3
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.0e-135 486.1 319 84.0
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 7.5e-130 467.6 316 79.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.9e-125 453.0 316 78.5
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.1e-124 449.5 317 77.3
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.2e-122 443.7 316 76.3
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 5.7e-122 441.4 312 76.6
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 9.8e-122 440.7 312 76.6
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.7e-119 432.6 313 75.1
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.7e-119 432.6 313 75.7
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.9e-117 426.4 314 74.5
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.9e-109 399.8 317 71.3
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.0e-102 377.5 321 68.2
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.1e-95 353.2 288 69.1
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 1.2e-63 247.7 330 47.0
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.1e-61 241.1 341 43.4
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.1e-61 241.1 285 48.4
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.5e-61 240.7 301 46.8
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.9e-61 240.4 259 54.8
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 4.3e-61 239.2 309 47.9
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 4.3e-61 239.2 288 49.3
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 5.7e-61 238.8 340 45.3
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 9.6e-61 238.0 313 46.3
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 2.1e-60 236.9 313 44.4
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 2.4e-59 233.4 336 45.5
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 5.3e-59 232.3 308 45.8
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 5.3e-59 232.3 332 44.3
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 6.9e-59 231.9 261 53.6
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.6e-58 229.9 288 47.2
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.3e-57 227.6 303 46.9
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.2e-57 226.9 310 44.5
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.2e-57 226.9 310 43.9
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 2.9e-57 226.5 309 45.3
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.9e-57 226.5 288 46.9
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 2.9e-57 226.5 304 46.4
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 3.8e-57 226.1 318 43.4
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 8.4e-57 224.9 315 44.1
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.4e-56 224.2 284 45.8
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.9e-56 223.8 305 45.2
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.5e-56 223.4 288 46.2
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 4.2e-56 222.6 305 45.2
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 9.3e-56 221.5 306 44.4
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 9.3e-56 221.5 318 42.5
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 2.1e-55 220.3 307 43.3
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.7e-55 219.9 314 45.9
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 4.6e-55 219.2 286 46.5
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 7.9e-55 218.4 346 39.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.0e-54 218.0 295 44.7
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.0e-54 218.0 312 43.9
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.8e-54 217.2 305 45.6
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.3e-54 216.9 303 42.6
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 3.9e-54 216.1 308 43.8
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 3.9e-54 216.1 267 47.6
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 5.1e-54 215.7 300 44.3
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 6.7e-54 215.3 309 42.4
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 8.7e-54 214.9 314 43.3
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.9e-53 213.8 314 45.2
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 3.3e-53 213.0 298 44.6
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 9.7e-53 211.5 306 44.1
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.3e-52 211.1 308 42.9
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.3e-52 211.1 299 42.5
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.6e-52 210.7 309 42.1
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 2.2e-52 210.3 337 38.6
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 2.8e-52 209.9 302 42.7
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 8.2e-52 208.4 310 42.6
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.2e-52 208.4 310 42.6
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 8.2e-52 208.4 315 43.2
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 2.4e-51 206.8 310 43.2
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.4e-51 206.8 315 42.9
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 4.1e-51 206.1 306 41.2
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 3.4e-50 203.0 319 42.9
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.7e-49 200.7 304 42.1
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.7e-49 200.7 311 42.4
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 1.7e-49 200.7 315 41.9
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 3.8e-49 199.5 314 42.0
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 5.0e-49 199.1 311 42.4
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 8.5e-49 198.4 312 41.0
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 4.2e-48 196.1 306 39.9
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 4.2e-48 196.1 307 40.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 4.2e-48 196.1 315 41.0
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.2e-48 196.1 258 45.7
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 9.4e-48 194.9 334 39.5
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.2e-47 194.5 300 40.7
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 1.6e-47 194.1 316 39.6
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 1.6e-47 194.1 322 39.4
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 2.7e-47 193.4 304 41.8
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.7e-47 193.4 295 41.4
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 6.1e-47 192.2 308 40.6
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.9e-47 191.8 309 40.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 3.9e-46 189.5 325 38.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 3.9e-46 189.5 320 40.9
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 8.8e-46 188.3 303 39.9
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.5e-45 187.6 310 41.6
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.5e-45 187.6 329 37.1
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 2.5e-45 186.8 296 41.2
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 4.3e-45 186.0 302 39.7
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 5.7e-45 185.7 254 42.9
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 5.7e-45 185.7 286 39.9
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.3e-44 184.5 303 39.9
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.3e-44 184.5 320 39.7
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.8e-44 182.6 228 46.1
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 4.8e-44 182.6 309 39.8
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 8.2e-44 181.8 316 39.6
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.1e-43 181.4 224 43.3
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.1e-43 181.4 352 37.8
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 6.9e-43 178.7 275 40.7
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 6.9e-43 178.7 353 38.0
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.2e-42 177.9 313 39.9
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.5e-42 176.0 314 39.8
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 2.2e-41 173.7 293 40.6
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 6.5e-41 172.2 293 40.6
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 8.5e-41 171.8 367 35.1
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 9.4e-40 168.3 200 52.0
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.2e-39 167.9 314 38.9
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 2.1e-39 167.2 297 38.0
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 1.8e-38 164.1 188 54.8
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.8e-38 164.1 245 43.3
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 3.0e-38 163.3 234 43.2
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.8e-36 156.8 190 44.7
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 6.3e-36 155.6 305 37.0
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 5.9e-34 149.1 310 37.1
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.9e-34 149.1 234 40.6
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 7.7e-34 148.7 234 40.6
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.9e-32 144.1 309 34.0
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 6.1e-31 139.0 221 38.5
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.4e-30 137.9 193 41.5
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.4e-30 137.9 220 37.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 4.4e-29 132.9 256 34.4
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 8.2e-28 128.6 308 33.1
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.4e-27 127.9 137 47.4
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 9.1e-27 125.2 217 36.9
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 3.2e-24 116.7 147 44.2
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 5.5e-24 115.9 207 35.7
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 2.1e-23 114.0 262 32.8
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 8.8e-22 108.6 285 33.0
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.2e-20 104.0 310 31.9
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 7.0e-19 99.0 202 32.2
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 9.1e-19 98.6 257 30.4
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 5.9e-18 95.9 136 41.2
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.6e-15 87.8 142 39.4
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 1.4e-14 84.7 182 32.4
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 5.7e-13 79.3 93 50.5
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 2.7e-10 70.5 149 33.6
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 1.0e-09 68.6 203 29.1
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.1e-08 65.1 240 27.5
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 5.6e-08 62.8 165 27.3
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 8.0e-07 58.9 101 37.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.3e-06 57.4 117 29.9
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 8.9e-06 55.5 71 42.3


User provided reference genes

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