Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 0.0e+00 1828.5 939 100.0
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 0.0e+00 1608.6 1013 84.0
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 0.0e+00 1525.0 1024 78.4
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 0.0e+00 1493.0 1011 77.9
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 0.0e+00 1426.4 1028 75.3
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 0.0e+00 1387.5 1003 75.0
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1372.1 978 75.5
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 0.0e+00 1330.9 973 73.3
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 0.0e+00 1320.1 973 73.4
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 0.0e+00 1298.1 954 73.2
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 0.0e+00 1274.2 951 73.2
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 0.0e+00 1225.7 996 67.6
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 1.4e-288 996.5 942 58.9
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 4.1e-224 782.3 1069 44.7
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 1.3e-222 777.3 980 46.0
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 3.2e-221 772.7 1009 46.4
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 5.5e-221 771.9 999 48.2
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 4.4e-218 762.3 1059 44.5
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.3e-217 760.8 1059 45.2
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 6.3e-217 758.4 1109 42.7
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 6.5e-214 748.4 1113 45.2
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 4.2e-213 745.7 1086 42.8
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.2e-212 744.2 1038 44.4
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 4.7e-212 742.3 1057 45.5
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 6.8e-211 738.4 1011 45.9
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.5e-210 737.3 1011 45.9
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 3.4e-210 736.1 1113 42.0
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.7e-210 735.3 1095 42.9
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 3.7e-209 732.6 1156 41.2
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.3e-209 731.9 1127 41.4
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.4e-208 729.9 1116 42.1
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 3.5e-207 726.1 1004 44.4
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 3.5e-207 726.1 1082 42.2
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 4.5e-207 725.7 1133 41.5
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 1.0e-206 724.5 1108 41.9
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.3e-206 724.2 1120 41.8
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 1.1e-205 721.1 1105 42.2
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 9.4e-205 718.0 1117 40.9
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 4.7e-204 715.7 1103 42.1
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.2e-202 711.1 875 46.5
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 2.0e-202 710.3 997 44.7
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.3e-201 707.6 836 48.4
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 1.7e-201 707.2 1102 41.4
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 8.3e-201 704.9 627 65.1
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 1.8e-200 703.7 1065 42.6
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 3.1e-200 703.0 990 43.4
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 4.1e-200 702.6 1157 40.3
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 1.2e-199 701.0 989 43.9
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.7e-199 699.9 1200 39.2
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 4.5e-199 699.1 1101 40.5
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 1.0e-198 698.0 1018 42.8
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.0e-198 698.0 818 47.2
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 1.3e-198 697.6 1080 40.2
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 1.3e-198 697.6 1080 40.2
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.5e-197 694.1 1063 43.2
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 2.5e-197 693.3 993 43.7
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 4.2e-197 692.6 1163 40.2
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 5.5e-197 692.2 1103 41.0
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 5.5e-197 692.2 1028 44.6
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 3.6e-196 689.5 995 44.4
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 4.7e-196 689.1 1013 42.5
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.4e-195 687.6 565 61.6
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 3.0e-195 686.4 1019 43.4
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 8.9e-195 684.9 1013 43.8
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 7.5e-194 681.8 1071 41.9
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 3.7e-193 679.5 1060 42.1
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 2.4e-192 676.8 986 43.9
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 7.0e-192 675.2 1043 42.6
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 9.2e-192 674.9 1086 39.9
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 2.7e-191 673.3 824 47.2
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 3.5e-191 672.9 1113 39.9
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 5.0e-190 669.1 1064 41.9
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.9e-189 667.2 1022 42.3
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 9.5e-189 664.8 870 46.1
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 4.7e-188 662.5 861 45.5
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 6.8e-187 658.7 851 45.8
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 9.8e-186 654.8 1011 40.0
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 1.7e-185 654.1 1000 41.9
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 6.4e-185 652.1 559 58.3
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 3.2e-184 649.8 1113 40.6
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 4.1e-184 649.4 1006 40.5
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 4.1e-184 649.4 1054 40.1
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.0e-182 644.8 1056 41.1
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 3.0e-182 643.3 1129 38.6
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.1e-181 641.3 1052 40.2
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.5e-181 641.0 857 45.6
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 3.6e-180 636.3 827 44.5
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.2e-178 631.3 1092 40.1
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.4e-178 629.8 958 41.5
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 2.9e-177 626.7 1030 40.1
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 1.2e-175 621.3 941 42.2
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 3.9e-174 616.3 957 40.6
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 6.0e-167 592.4 1143 37.1
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 9.6e-165 585.1 1039 37.8
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 4.9e-161 572.8 945 39.9
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.6e-159 567.8 845 43.4
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 1.7e-158 564.3 980 37.4
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 9.9e-154 548.5 503 55.7
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 1.7e-153 547.7 568 51.2
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 9.6e-149 531.9 650 47.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.3e-140 505.0 1116 35.9
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 4.6e-127 459.9 873 38.8
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 2.8e-124 450.7 417 55.9
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 5.1e-118 429.9 760 35.4
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.3e-117 427.2 530 47.0
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 4.5e-114 416.8 313 66.5
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 7.2e-112 409.5 551 43.0
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.7e-111 407.5 633 42.0
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 1.8e-110 404.8 761 37.5
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 3.7e-108 397.1 501 41.5
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 1.1e-107 395.6 533 43.7
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.6e-103 381.7 516 43.0
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 2.3e-102 377.9 436 47.2
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.5e-96 358.6 848 33.8
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 3.1e-91 340.9 677 38.6
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 1.4e-62 245.7 230 57.4
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.0e-62 244.2 223 56.1
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 2.2e-60 238.4 642 31.3
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 8.4e-28 130.2 275 33.5
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 2.3e-17 95.5 232 30.2
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 3.3e-16 91.7 58 67.2
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 7.4e-16 90.5 105 47.6
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.6e-15 89.4 79 57.0
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 3.7e-15 88.2 75 54.7
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.3e-15 87.4 80 53.8
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 3.1e-14 85.1 58 67.2
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 6.9e-14 84.0 175 38.9
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 6.9e-14 84.0 49 73.5
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 3.0e-09 68.6 113 42.5
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 2.2e-07 62.4 83 48.2
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.8e-07 62.0 34 73.5
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 2.8e-07 62.0 108 40.7
C03p37040 Brassica napus HOM05D000922 ORTHO05D007418 6.9e-06 57.4 48 62.5


User provided reference genes

Program Settings