Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 4.9e-148 528.1 329 100.0
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 2.8e-119 432.6 337 82.2
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 4.9e-116 421.8 332 80.7
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 2.1e-111 406.4 333 84.1
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 5.1e-105 385.2 334 80.5
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 1.2e-101 374.0 333 79.9
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 6.0e-98 361.7 345 72.2
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 1.1e-96 357.5 334 73.7
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 1.5e-96 357.1 343 70.0
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 1.5e-96 357.1 343 70.0
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 9.6e-88 327.8 330 72.4
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 1.4e-86 323.9 354 64.4
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 1.8e-86 323.6 334 67.7
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 3.7e-79 299.3 316 70.9
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 7.9e-74 281.6 333 64.9
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 3.7e-63 246.1 355 58.6
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.4e-62 244.2 355 57.2
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 2.4e-62 243.4 346 56.1
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 3.4e-61 239.6 341 58.4
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 4.5e-61 239.2 342 59.6
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 1.7e-60 237.3 346 55.8
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 2.2e-60 236.9 339 60.5
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.2e-58 231.1 345 58.6
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.2e-58 231.1 345 58.6
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 2.1e-58 230.3 342 59.6
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 2.7e-58 229.9 338 53.8
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 6.1e-58 228.8 364 55.5
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 2.3e-57 226.9 336 51.5
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 3.9e-57 226.1 349 53.9
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 6.7e-57 225.3 373 55.0
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 8.8e-57 224.9 340 52.6
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 3.3e-56 223.0 350 57.4
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 3.3e-56 223.0 330 47.0
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 7.4e-56 221.9 342 58.5
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 7.4e-56 221.9 374 54.0
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 9.7e-56 221.5 341 55.1
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 9.7e-56 221.5 357 53.8
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 1.7e-55 220.7 362 53.0
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 4.8e-55 219.2 368 52.7
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 4.8e-55 219.2 358 54.7
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 4.8e-55 219.2 346 55.5
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 8.2e-55 218.4 335 55.8
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 1.8e-54 217.2 379 52.5
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 2.4e-54 216.9 359 54.9
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 9.1e-54 214.9 343 52.8
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.2e-53 214.5 340 46.8
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 1.6e-53 214.2 343 51.3
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 2.0e-53 213.8 343 56.3
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 2.0e-53 213.8 353 54.1
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 3.5e-53 213.0 334 53.6
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 4.5e-53 212.6 366 53.8
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 4.5e-53 212.6 370 52.7
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 1.0e-52 211.5 384 51.6
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 1.0e-52 211.5 350 55.4
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 1.7e-52 210.7 366 53.0
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 2.9e-52 209.9 379 46.2
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 5.0e-52 209.1 338 56.5
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 8.5e-52 208.4 362 53.9
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.2e-51 206.5 351 56.1
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 3.2e-51 206.5 356 54.8
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.6e-50 204.1 347 53.0
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 2.7e-50 203.4 374 52.4
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 2.7e-50 203.4 342 52.9
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 8.0e-50 201.8 350 54.9
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 8.0e-50 201.8 374 51.9
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.0e-49 199.9 350 54.6
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 4.0e-49 199.5 367 54.0
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 1.2e-48 198.0 339 52.2
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.5e-48 197.6 344 53.5
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 2.0e-48 197.2 371 41.5
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 5.7e-48 195.7 347 53.6
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 9.7e-48 194.9 363 52.1
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 2.2e-47 193.7 335 43.6
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 2.2e-47 193.7 335 43.6
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 8.2e-47 191.8 360 49.2
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 1.2e-45 188.0 394 48.2
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 1.6e-45 187.6 335 48.7
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 5.9e-45 185.7 336 48.5
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.9e-44 183.3 401 45.4
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 3.8e-44 183.0 355 51.3
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 5.0e-44 182.6 368 50.3
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 2.7e-42 176.8 380 47.4
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 8.8e-41 171.8 350 51.1
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 2.6e-40 170.2 334 51.5
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.2e-39 167.2 291 54.6
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 4.8e-39 166.0 338 41.1
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 8.3e-39 165.2 376 46.0
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 9.1e-38 161.8 331 48.6
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 3.8e-36 156.4 350 46.6
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 5.5e-35 152.5 333 42.9
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 1.5e-32 144.4 161 55.3
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 3.4e-32 143.3 158 54.4
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 3.4e-32 143.3 397 41.1
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 2.8e-31 140.2 270 56.7
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 3.5e-29 133.3 149 53.7
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 3.3e-27 126.7 244 50.0
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 4.3e-27 126.3 126 57.1
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 2.8e-26 123.6 121 55.4
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 4.7e-26 122.9 192 44.3
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 8.0e-26 122.1 497 31.4
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 2.3e-25 120.6 284 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 3.1e-25 120.2 398 32.2
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 2.0e-24 117.5 124 52.4
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 2.5e-19 100.5 173 43.4
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 3.3e-19 100.1 287 37.6
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 4.3e-19 99.8 208 36.5
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 2.0e-16 90.9 95 56.8
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 2.2e-15 87.4 84 63.1
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 2.2e-15 87.4 518 29.7
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 3.7e-15 86.7 106 46.2
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 8.3e-15 85.5 182 36.3
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.0e-12 78.6 77 61.0
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.3e-12 78.2 106 44.3
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.3e-12 78.2 104 51.9
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 3.0e-12 77.0 98 45.9
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 2.8e-10 70.5 75 57.3
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-08 63.9 114 37.7
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-08 63.9 82 47.6
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 2.6e-08 63.9 113 37.2
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.5e-08 62.4 110 37.3
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-07 61.6 114 36.8
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.1e-06 58.5 123 35.0
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 1.4e-06 58.2 44 61.4
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-06 57.4 88 44.3


User provided reference genes

Program Settings