Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 2.4e-193 678.7 353 100.0
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 7.0e-153 544.3 326 89.6
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 8.6e-151 537.3 358 83.2
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 2.7e-128 462.6 336 79.8
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 2.7e-120 436.0 359 71.0
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 2.1e-117 426.4 335 74.9
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 3.6e-117 425.6 328 75.9
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 4.9e-114 415.2 338 71.9
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 5.4e-113 411.8 359 68.5
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.1e-112 409.8 309 79.0
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-108 397.1 338 69.2
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 9.0e-108 394.4 337 68.5
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 7.4e-102 374.8 347 66.3
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.0e-79 301.2 310 63.2
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 1.7e-77 293.9 343 58.0
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 2.6e-75 286.6 394 51.5
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 1.3e-58 231.1 375 46.4
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.6e-56 224.2 363 47.7
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 3.6e-56 223.0 374 43.6
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 2.6e-54 216.9 378 43.7
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 7.5e-54 215.3 372 44.1
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.7e-53 214.2 359 45.7
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 2.8e-53 213.4 380 43.4
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 2.8e-53 213.4 377 43.0
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 3.7e-53 213.0 368 44.6
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 1.1e-52 211.5 378 43.7
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 5.4e-52 209.1 362 42.0
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 5.4e-52 209.1 367 44.7
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 7.0e-52 208.8 370 43.8
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 1.2e-51 208.0 388 43.8
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 2.7e-51 206.8 354 43.8
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 1.0e-50 204.9 391 41.7
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 1.3e-50 204.5 374 42.0
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 2.3e-50 203.8 358 44.4
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.8e-50 203.0 367 43.3
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 3.8e-50 203.0 367 41.4
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.0e-50 202.6 369 43.4
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 6.5e-50 202.2 371 42.0
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 8.6e-50 201.8 367 42.5
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.1e-49 201.4 379 42.2
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.5e-49 201.1 362 43.6
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 1.9e-49 200.7 386 44.8
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 5.5e-49 199.1 380 43.2
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 9.5e-49 198.4 372 42.7
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 2.8e-48 196.8 386 42.2
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 8.0e-48 195.3 368 41.0
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 1.0e-47 194.9 375 42.9
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 1.5e-46 191.0 348 42.8
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.6e-46 190.3 376 41.2
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 3.4e-46 189.9 368 42.4
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 4.4e-46 189.5 371 42.0
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 7.5e-46 188.7 351 42.5
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 1.7e-45 187.6 355 41.7
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 3.7e-45 186.4 370 40.8
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 3.7e-45 186.4 350 42.6
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 3.7e-45 186.4 391 38.9
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 8.3e-45 185.3 373 42.4
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 1.8e-44 184.1 373 41.6
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 4.1e-44 183.0 354 41.2
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 4.1e-44 183.0 453 36.9
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 4.1e-44 183.0 356 40.2
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 1.2e-43 181.4 355 40.3
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 2.7e-43 180.3 304 47.4
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 5.9e-43 179.1 355 41.4
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 1.3e-42 177.9 374 40.9
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.3e-42 177.9 364 42.0
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 5.0e-42 176.0 402 36.6
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.5e-41 174.5 364 41.8
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 4.3e-41 172.9 346 41.6
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 5.6e-41 172.6 358 41.9
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.0e-39 168.3 352 40.6
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.4e-39 167.9 414 36.7
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.4e-39 167.9 348 41.1
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.8e-39 167.5 369 39.0
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 3.0e-39 166.8 479 33.6
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 2.2e-37 160.6 318 41.2
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 6.4e-37 159.1 345 38.6
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 1.8e-36 157.5 362 38.1
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 9.2e-36 155.2 345 38.3
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 1.6e-35 154.5 302 42.1
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 3.0e-34 150.2 403 36.2
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 4.3e-33 146.4 310 39.0
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 7.3e-33 145.6 379 35.6
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 6.8e-31 139.0 293 39.2
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 1.2e-30 138.3 345 36.2
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.2e-30 138.3 404 33.7
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 2.6e-30 137.1 293 41.0
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 5.8e-30 136.0 407 33.7
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.9e-29 132.9 426 33.1
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 8.3e-29 132.1 351 34.8
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 4.1e-28 129.8 357 34.5
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 9.5e-25 118.6 341 34.6
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 6.2e-24 115.9 329 35.6
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 7.5e-22 109.0 398 30.4
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 6.4e-21 105.9 360 31.4
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 8.3e-21 105.5 360 31.4
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 1.1e-20 105.1 349 33.2
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 1.7e-18 97.8 333 30.0
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.1e-18 96.3 306 32.0
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 6.6e-18 95.9 173 46.2
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.2e-16 89.4 209 36.4
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 6.8e-15 85.9 343 31.5
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 3.2e-12 77.0 63 66.7
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.1e-12 76.6 67 58.2
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.4e-12 76.3 67 58.2
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-11 75.1 67 56.7
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-11 75.1 61 60.7
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.2e-11 75.1 358 28.2
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 2.1e-11 74.3 52 61.5
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.1e-11 74.3 47 70.2
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 2.1e-11 74.3 47 70.2
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.0e-11 72.8 67 56.7
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.0e-11 72.8 67 55.2
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.0e-10 72.0 67 55.2
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.0e-10 72.0 67 55.2
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 3.0e-10 70.5 205 34.6
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.9e-09 67.8 93 46.2
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.9e-09 67.8 356 28.4
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 8.1e-08 62.4 201 28.4
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 9.0e-07 58.9 137 38.0
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 2.0e-06 57.8 52 59.6
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 4.4e-06 56.6 203 28.1
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 9.9e-06 55.5 38 68.4


User provided reference genes

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