Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 9.3e-44 179.9 94 100.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 4.3e-41 171.0 94 96.8
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 4.8e-40 167.5 95 95.8
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.4e-39 166.0 94 95.7
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 3.8e-37 157.9 95 91.6
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.3e-32 142.9 94 81.9
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 6.2e-32 140.6 93 84.9
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 6.2e-32 140.6 95 77.9
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 3.1e-31 138.3 91 80.2
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.1e-31 138.3 87 79.3
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 5.3e-31 137.5 93 82.8
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 5.3e-31 137.5 93 82.8
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 1.5e-30 136.0 96 79.2
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.5e-30 136.0 93 81.7
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.5e-30 136.0 93 81.7
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.4e-30 134.8 92 76.1
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 4.5e-30 134.4 93 80.6
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.8e-30 134.0 93 75.3
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 5.8e-30 134.0 93 75.3
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.7e-29 132.5 85 81.2
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.7e-29 132.5 85 81.2
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.7e-29 132.5 85 81.2
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 8.4e-29 130.2 93 75.3
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.9e-28 129.0 95 71.6
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.9e-28 129.0 96 75.0
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.9e-28 129.0 93 75.3
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.5e-28 128.6 96 70.8
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 1.2e-27 126.3 93 71.0
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 1.6e-27 125.9 94 71.3
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.7e-27 125.2 92 70.7
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.7e-27 125.2 95 73.7
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.5e-27 124.8 92 72.8
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 4.6e-27 124.4 93 69.9
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 4.6e-27 124.4 91 68.1
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 6.0e-27 124.0 93 69.9
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 6.0e-27 124.0 92 73.9
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 7.9e-27 123.6 92 72.8
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 7.9e-27 123.6 93 72.0
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.0e-26 123.2 89 71.9
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.3e-26 122.9 93 68.8
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.8e-26 122.5 90 71.1
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.8e-26 122.5 94 71.3
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 3.0e-26 121.7 93 72.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 3.0e-26 121.7 93 68.8
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 3.9e-26 121.3 92 69.6
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 3.9e-26 121.3 92 69.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 6.7e-26 120.6 93 69.9
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 6.7e-26 120.6 92 68.5
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 8.7e-26 120.2 90 70.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.9e-25 119.0 94 70.2
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.5e-25 118.6 100 66.0
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.3e-25 118.2 95 68.4
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 4.3e-25 117.9 92 67.4
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 7.4e-25 117.1 92 66.3
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 7.4e-25 117.1 93 71.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 7.4e-25 117.1 89 67.4
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 9.6e-25 116.7 92 72.8
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 1.3e-24 116.3 96 67.7
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.6e-24 115.9 93 68.8
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 1.6e-24 115.9 93 66.7
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 2.1e-24 115.5 93 64.5
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 2.1e-24 115.5 93 67.7
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.1e-24 115.5 86 72.1
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 2.1e-24 115.5 91 63.7
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.8e-24 115.2 92 67.4
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 3.7e-24 114.8 93 66.7
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 8.2e-24 113.6 91 63.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 8.2e-24 113.6 93 63.4
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 8.2e-24 113.6 95 66.3
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 8.2e-24 113.6 90 66.7
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 8.2e-24 113.6 93 65.6
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.1e-23 113.2 93 66.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.8e-23 112.5 93 63.4
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-23 112.1 77 76.6
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-23 112.1 77 76.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.4e-23 112.1 90 68.9
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 3.1e-23 111.7 92 62.0
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 3.1e-23 111.7 90 63.3
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 3.1e-23 111.7 93 68.8
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 3.1e-23 111.7 83 69.9
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 5.3e-23 110.9 90 62.2
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 6.9e-23 110.5 92 65.2
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 9.0e-23 110.2 90 61.1
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.2e-22 109.8 94 62.8
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 1.5e-22 109.4 92 66.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 2.0e-22 109.0 93 61.3
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.0e-22 109.0 94 67.0
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 2.0e-22 109.0 94 67.0
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 2.0e-22 109.0 95 65.3
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.6e-22 108.6 90 63.3
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 3.4e-22 108.2 93 63.4
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 4.5e-22 107.8 93 62.4
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.5e-22 107.8 93 62.4
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.5e-22 107.8 93 62.4
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 4.5e-22 107.8 93 66.7
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 4.5e-22 107.8 93 65.6
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.8e-22 107.5 93 64.5
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.0e-21 106.7 93 61.3
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 1.0e-21 106.7 89 65.2
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.3e-21 106.3 93 65.6
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.3e-21 106.3 93 63.4
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.7e-21 105.9 91 64.8
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 2.2e-21 105.5 93 59.1
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.9e-21 105.1 90 62.2
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.4e-21 103.6 93 61.3
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.1e-20 103.2 93 62.4
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 3.2e-20 101.7 75 73.3
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 5.5e-20 100.9 78 61.5
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.1e-19 99.0 90 56.7
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 2.7e-19 98.6 69 72.5
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 3.5e-19 98.2 94 55.3
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 4.6e-19 97.8 63 71.4
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 3.0e-18 95.1 95 57.9
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.1e-17 93.2 76 69.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.9e-17 92.4 74 62.2
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 5.7e-17 90.9 66 69.7
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 5.7e-17 90.9 94 55.3
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 5.7e-17 90.9 87 57.5
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.4e-17 90.5 94 51.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 9.7e-17 90.1 77 62.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 1.6e-16 89.4 78 64.1
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 3.7e-16 88.2 91 53.8
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 4.8e-16 87.8 76 61.8
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 6.3e-16 87.4 91 51.6
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 8.2e-16 87.0 80 55.0
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.1e-15 86.7 100 49.0
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.1e-15 86.7 87 57.5
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-15 85.9 100 49.0
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 1.8e-15 85.9 62 71.0
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 1.8e-15 85.9 96 49.0
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 2.4e-15 85.5 130 48.5
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.6e-14 82.0 90 52.2
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 7.7e-14 80.5 80 51.2
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 3.8e-13 78.2 65 64.6
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 1.9e-12 75.9 88 55.7
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 2.5e-12 75.5 84 51.2
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 3.2e-12 75.1 80 51.2
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 3.2e-12 75.1 56 62.5
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.6e-11 71.6 61 55.7
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 7.4e-09 63.9 55 56.4
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 7.4e-09 63.9 60 56.7
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.7e-08 62.8 48 58.3
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 2.8e-08 62.0 42 83.3
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 1.1e-07 60.1 48 60.4
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 2.4e-07 58.9 58 53.4
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.0e-06 55.8 34 76.5
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 5.9e-06 54.3 65 46.2
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 7.7e-06 53.9 65 46.2


User provided reference genes

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