Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47675 Arabidopsis thaliana HOM05D000370 ORTHO05D001366 1.9e-44 182.2 97 100.0
Thhalv10017752m.g Eutrema salsugineum HOM05D000370 ORTHO05D001366 7.6e-33 143.7 89 83.1
Carub.0004s2173 Capsella rubella HOM05D000370 ORTHO05D001366 1.1e-31 139.8 89 82.0
Sp4g21940 Schrenkiella parvula HOM05D000370 ORTHO05D001366 3.2e-31 138.3 89 80.9
BraA04t18472Z Brassica rapa HOM05D000370 ORTHO05D001366 4.2e-31 137.9 89 80.9
A04p30360 Brassica napus HOM05D000370 ORTHO05D001366 1.2e-30 136.3 89 80.9
C04p67470 Brassica napus HOM05D000370 ORTHO05D001366 1.2e-30 136.3 89 80.9
BolC4t28244H Brassica oleracea HOM05D000370 ORTHO05D001366 2.1e-30 135.6 89 79.8
BcaC02g07423 Brassica carinata HOM05D000370 ORTHO05D001366 5.6e-28 127.5 80 80.0
BcaB06g29112 Brassica carinata HOM05D000370 ORTHO05D001366 5.3e-26 120.9 87 73.6
AT2G39690 Arabidopsis thaliana HOM05D000370 ORTHO05D001366 2.9e-24 115.2 63 95.2
CARHR134520 Cardamine hirsuta HOM05D000370 ORTHO05D001366 1.1e-23 113.2 63 90.5
Aa31LG5G19970 Aethionema arabicum HOM05D000370 ORTHO05D001366 4.5e-17 91.3 69 69.6
THA.LOC104824281 Tarenaya hassleriana HOM05D000370 ORTHO05D001366 1.8e-13 79.3 89 52.8
LjContig00141g0011124 Lotus japonicus HOM05D000370 ORTHO05D001366 8.7e-13 77.0 89 50.6
CiPaw.01G288300 Carya illinoinensis HOM05D000370 ORTHO05D001366 1.5e-12 76.3 89 52.8
PGR142G3544 Punica granatum HOM05D000370 ORTHO05D001366 1.5e-12 76.3 89 51.7
arahy.Tifrunner.gnm1.ann1.KE1X4X Arachis hypogaea HOM05D000370 ORTHO05D001366 2.5e-12 75.5 89 49.4
arahy.Tifrunner.gnm1.ann1.RJ2ENL Arachis hypogaea HOM05D000370 ORTHO05D001366 2.5e-12 75.5 89 49.4
VMungo0647G2191 Vigna mungo HOM05D000370 ORTHO05D001366 5.7e-12 74.3 89 50.6
TAR623G1607 Trochodendron aralioides HOM05D000370 ORTHO05D001366 3.7e-11 71.6 89 48.3
Glyma.14G068300 Glycine max HOM05D000370 ORTHO05D001366 6.3e-11 70.9 89 48.3
QL08p059637 Quercus lobata HOM05D000370 ORTHO05D001366 1.4e-10 69.7 89 49.4
MD01G1135300 Malus domestica HOM05D000370 ORTHO05D001366 1.8e-10 69.3 89 49.4
Medtr5g079910 Medicago truncatula HOM05D000370 ORTHO05D001366 1.8e-10 69.3 90 47.8
Duzib114G1038 Durio zibethinus HOM05D000370 ORTHO05D001366 2.4e-10 68.9 89 50.6
Prupe.2G236600 Prunus persica HOM05D000370 ORTHO05D001366 2.4e-10 68.9 89 48.3
Phvul.008G232500 Phaseolus vulgaris HOM05D000370 ORTHO05D001366 5.3e-10 67.8 89 47.2
Potri.010G202900 Populus trichocarpa HOM05D000370 ORTHO05D001366 5.3e-10 67.8 89 46.1
THA.LOC104799340 Tarenaya hassleriana HOM05D000370 ORTHO05D001366 6.9e-10 67.4 68 51.5
Thecc.10G040500 Theobroma cacao HOM05D000370 ORTHO05D001366 6.9e-10 67.4 89 49.4
AT3G12540 Arabidopsis thaliana HOM05D000370 ORTHO05D001366 9.0e-10 67.0 81 42.0
Carub.0003s1187 Capsella rubella HOM05D000370 ORTHO05D001366 9.0e-10 67.0 81 42.0
FAN01G0125 Fragaria x ananassa HOM05D000370 ORTHO05D001366 9.0e-10 67.0 89 48.3
FvH4_7g22670 Fragaria vesca HOM05D000370 ORTHO05D001366 1.5e-09 66.2 89 48.3
FAN01G1643 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.5e-09 66.2 89 48.3
FAN03G1955 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.5e-09 66.2 89 48.3
FAN06G0629 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.5e-09 66.2 89 48.3
FAN06G4619 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.5e-09 66.2 89 48.3
FAN10G0290 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.5e-09 66.2 89 48.3
Sp3g10680 Schrenkiella parvula HOM05D000370 ORTHO05D001366 2.0e-09 65.9 89 39.3
Aa31LG3G110 Aethionema arabicum HOM05D000370 ORTHO05D001366 2.6e-09 65.5 81 43.2
Dinv26025 Davidia involucrata HOM05D000370 ORTHO05D001366 3.4e-09 65.1 89 46.1
CARHR087040 Cardamine hirsuta HOM05D000370 ORTHO05D001366 4.5e-09 64.7 68 47.1
Thhalv10020556m.g Eutrema salsugineum HOM05D000370 ORTHO05D001366 1.0e-08 63.5 63 49.2
RcHm_v2.0_Chr1g0367751 Rosa chinensis HOM05D000370 ORTHO05D001366 1.0e-08 63.5 89 47.2
AL3G24170 Arabidopsis lyrata HOM05D000370 ORTHO05D001366 1.3e-08 63.2 63 49.2
FAN03G1228 Fragaria x ananassa HOM05D000370 ORTHO05D001366 1.3e-08 63.2 89 47.2
BcaB06g25533 Brassica carinata HOM05D000370 ORTHO05D001366 1.7e-08 62.8 91 40.7
CANSAT56G2573 Cannabis sativa HOM05D000370 ORTHO05D001366 1.7e-08 62.8 89 44.9
Psat2g041320 Pisum sativum HOM05D000370 ORTHO05D001366 1.7e-08 62.8 90 45.6
Ciclev10033326m.g Citrus clementina HOM05D000370 ORTHO05D001366 2.2e-08 62.4 88 43.2
Lalb_Chr04g0251211 Lupinus albus HOM05D000370 ORTHO05D001366 2.2e-08 62.4 89 41.6
Nn2g11125 Nelumbo nucifera HOM05D000370 ORTHO05D001366 2.2e-08 62.4 94 42.6
TWI38G0993 Tripterygium wilfordii HOM05D000370 ORTHO05D001366 2.9e-08 62.0 95 41.1
RhsimUnG0041900 Rhododendron simsii HOM05D000370 ORTHO05D001366 3.8e-08 61.6 87 46.0
Dinv03040 Davidia involucrata HOM05D000370 ORTHO05D001366 1.9e-07 59.3 89 46.1
MD07G1200000 Malus domestica HOM05D000370 ORTHO05D001366 1.9e-07 59.3 89 46.1
Aqoxy4G02885 Aquilegia oxysepala HOM05D000370 ORTHO05D001366 2.5e-07 58.9 94 39.4
BolC5t34205H Brassica oleracea HOM05D000370 ORTHO05D001366 2.5e-07 58.9 76 40.8
BraA05t22493Z Brassica rapa HOM05D000370 ORTHO05D001366 2.5e-07 58.9 89 40.4
A05p36940 Brassica napus HOM05D000370 ORTHO05D001366 3.2e-07 58.5 89 39.3
BcaC05g29259 Brassica carinata HOM05D000370 ORTHO05D001366 4.2e-07 58.2 76 40.8
Haze_17076 Corylus avellana HOM05D000370 ORTHO05D001366 4.2e-07 58.2 101 42.6
COL.COLO4_15057 Corchorus olitorius HOM05D001158 ORTHO05D000964 5.5e-07 57.8 64 50.0
Manes.07G117000 Manihot esculenta HOM05D000370 ORTHO05D001366 5.5e-07 57.8 97 41.2
Cc02_g07740 Coffea canephora HOM05D000370 ORTHO05D001366 7.2e-07 57.4 89 43.8
Gohir.A06G167200 Gossypium hirsutum HOM05D000370 ORTHO05D001366 7.2e-07 57.4 92 43.5
Ca_05891_v3 Cicer arietinum L. HOM05D000370 ORTHO05D001366 9.3e-07 57.0 90 42.2
Ah.10g037210 Amaranthus hybridus HOM05D000370 ORTHO05D001366 1.2e-06 56.6 89 43.8
C05p55390 Brassica napus HOM05D000370 ORTHO05D001366 1.2e-06 56.6 76 39.5
BolC3t16846H Brassica oleracea HOM05D000370 ORTHO05D001366 1.2e-06 56.6 93 36.6
A03p37680 Brassica napus HOM05D000370 ORTHO05D001366 2.1e-06 55.8 80 40.0
BraA03t12921Z Brassica rapa HOM05D000370 ORTHO05D001366 2.1e-06 55.8 80 40.0
SalBow6G2342 Salvia bowleyana HOM05D000370 ORTHO05D001366 2.1e-06 55.8 91 44.0
Cfa001466 Carpinus fangiana HOM05D000370 ORTHO05D001366 3.6e-06 55.1 72 45.8
C03p45730 Brassica napus HOM05D000370 ORTHO05D001366 4.6e-06 54.7 80 38.8
DCAR_011711 Daucus carota HOM05D000370 ORTHO05D001366 4.6e-06 54.7 89 42.7
TPR.G3504 Trifolium pratense HOM05D000370 ORTHO05D001366 7.9e-06 53.9 90 43.3


User provided reference genes

Program Settings