Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.1e-116 423.3 210 100.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 5.9e-99 364.4 223 81.6
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.3e-98 363.2 216 85.6
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 7.5e-94 347.4 227 76.7
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 8.3e-93 344.0 225 76.0
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.8e-92 342.8 227 75.3
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 3.2e-92 342.0 228 76.8
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 4.1e-92 341.7 228 76.3
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 4.1e-92 341.7 221 76.0
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.6e-91 339.7 224 76.3
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 4.5e-91 338.2 227 74.9
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 1.0e-90 337.0 248 69.8
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.3e-90 336.7 221 74.7
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.3e-90 336.7 228 74.6
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.9e-90 335.1 226 73.9
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 1.9e-89 332.8 228 73.7
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 4.3e-89 331.6 232 72.4
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 2.1e-88 329.3 223 74.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 2.1e-88 329.3 223 74.4
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 9.8e-86 320.5 224 76.3
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.5e-78 296.6 224 64.3
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 2.0e-78 296.2 188 77.7
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 3.7e-77 292.0 221 67.0
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.4e-76 290.0 209 67.0
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.2e-76 288.9 232 62.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.1e-76 288.5 225 63.1
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 5.4e-76 288.1 219 66.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 7.1e-76 287.7 220 66.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 7.8e-75 284.3 209 69.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 3.0e-74 282.3 208 66.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 8.6e-74 280.8 206 67.5
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.1e-73 280.4 221 64.7
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.9e-73 279.6 225 61.3
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.5e-73 279.3 210 64.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.3e-73 278.9 221 63.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 5.6e-73 278.1 220 62.7
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 5.6e-73 278.1 226 62.4
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.6e-72 276.6 214 63.1
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 1.6e-72 276.6 221 62.9
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 2.1e-72 276.2 215 64.7
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 2.1e-72 276.2 210 65.2
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.8e-72 275.8 210 64.3
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 3.6e-72 275.4 210 64.3
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 6.2e-72 274.6 223 62.3
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 6.2e-72 274.6 212 64.2
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 6.2e-72 274.6 217 63.6
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 1.1e-71 273.9 206 66.5
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.1e-71 272.3 211 64.5
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.1e-71 272.3 216 63.0
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.8e-71 271.2 224 60.7
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.8e-71 271.2 214 63.1
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 6.8e-71 271.2 211 64.9
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.2e-70 270.4 223 59.6
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-70 270.4 217 62.7
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.2e-70 270.4 216 62.5
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.5e-70 270.0 212 64.2
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-70 269.6 218 61.5
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 3.4e-70 268.9 213 62.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.4e-70 268.9 218 62.4
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.4e-70 268.5 212 64.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 4.4e-70 268.5 213 63.4
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 5.8e-70 268.1 218 61.0
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 5.8e-70 268.1 224 59.4
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 7.5e-70 267.7 224 61.2
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.3e-69 266.9 210 61.9
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.3e-69 266.9 209 63.6
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.7e-69 266.5 212 62.7
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.7e-69 266.5 208 64.9
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.2e-69 266.2 208 62.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.9e-69 265.8 227 60.4
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.7e-69 265.4 210 63.3
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.9e-69 265.0 223 59.6
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.4e-69 264.6 225 60.9
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 6.4e-69 264.6 228 58.3
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 6.4e-69 264.6 208 61.5
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 6.4e-69 264.6 208 64.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.4e-68 263.5 211 61.1
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.9e-68 263.1 218 61.9
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.9e-68 263.1 220 58.6
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 2.4e-68 262.7 215 60.9
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 5.4e-68 261.5 228 58.8
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 7.1e-68 261.2 222 61.7
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 7.1e-68 261.2 221 60.2
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 9.2e-68 260.8 216 61.6
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.7e-67 259.2 229 59.0
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.7e-67 259.2 220 58.6
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 6.0e-67 258.1 210 61.9
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 6.0e-67 258.1 237 57.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.7e-66 256.5 218 58.3
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 2.3e-66 256.1 173 70.5
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 2.3e-66 256.1 207 62.3
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 3.9e-66 255.4 208 61.1
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 3.9e-66 255.4 219 60.7
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 3.9e-66 255.4 215 59.1
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.6e-66 254.2 215 59.5
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 8.6e-66 254.2 218 59.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 8.6e-66 254.2 213 59.2
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.1e-65 253.8 215 59.5
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.5e-65 253.4 208 60.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 5.6e-65 251.5 239 54.8
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 9.6e-65 250.8 217 57.1
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.2e-64 250.4 216 58.3
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.6e-64 250.0 231 55.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.1e-64 249.6 216 59.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.6e-64 248.8 246 53.3
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.1e-63 247.3 207 58.9
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.1e-63 247.3 229 57.2
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.4e-63 246.9 209 59.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 2.0e-62 243.0 154 72.7
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.0e-62 243.0 226 56.2
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 3.4e-62 242.3 262 50.4
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 3.4e-62 242.3 215 58.1
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 4.4e-62 241.9 257 51.0
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.6e-62 241.1 132 89.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.9e-62 240.7 219 53.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 2.2e-61 239.6 214 58.4
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 2.9e-61 239.2 219 54.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-61 239.2 219 54.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-61 239.2 219 54.8
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 3.8e-61 238.8 205 56.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 3.8e-61 238.8 208 60.6
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.4e-60 235.0 214 57.9
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.6e-59 233.4 236 50.8
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.5e-59 232.3 219 53.0
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 6.0e-59 231.5 219 55.7
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 7.8e-59 231.1 214 53.7
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.3e-58 229.6 256 46.1
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 3.9e-58 228.8 207 57.0
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.1e-57 227.3 249 48.6
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.9e-57 226.5 150 70.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.1e-56 223.0 197 57.4
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.8e-56 222.6 210 52.4
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.9e-53 212.6 268 44.4
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.4e-52 209.5 135 74.1
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 9.3e-52 207.6 142 67.6
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.6e-49 198.4 133 69.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.0e-46 189.9 132 68.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.7e-45 186.8 129 70.5
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.2e-45 186.4 219 48.9
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.1e-44 184.1 125 70.4
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 2.4e-44 183.0 127 68.5
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.6e-43 178.7 166 55.4
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 2.3e-42 176.4 124 65.3
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 7.4e-41 171.4 148 54.7
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 4.8e-40 168.7 118 69.5
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.6e-38 162.9 131 58.0
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.4e-31 139.8 87 72.4
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 3.4e-30 136.0 127 57.5
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.4e-28 130.6 84 70.2
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-27 127.1 230 37.4
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.4e-25 118.2 71 80.3
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 4.8e-24 115.5 217 33.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 9.0e-23 111.3 117 50.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 5.5e-20 102.1 124 40.3
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 3.6e-19 99.4 73 67.1
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 3.7e-16 89.4 96 51.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.3e-16 88.6 77 59.7
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 9.1e-15 84.7 102 41.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.2e-14 84.3 125 36.8
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.6e-14 83.2 163 35.0
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.6e-14 83.2 89 48.3
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 2.6e-14 83.2 119 37.0
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 4.5e-14 82.4 73 60.3
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.0e-10 71.2 94 41.5
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.4e-10 70.9 83 47.0
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 5.1e-10 68.9 91 42.9
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 4.4e-09 65.9 56 57.1
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 1.5e-06 57.4 49 57.1
C01p08370 Brassica napus HOM05D004149 ORTHO05D005028 2.0e-06 57.0 38 73.7


User provided reference genes

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