Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G47070 Arabidopsis thaliana HOM05D005811 ORTHO05D007070 4.2e-50 201.1 101 100.0
AL5G26310 Arabidopsis lyrata HOM05D005811 ORTHO05D007070 6.5e-43 177.2 102 91.2
Carub.0005s1331 Capsella rubella HOM05D005811 ORTHO05D007070 2.8e-38 161.8 105 80.0
A06p20460 Brassica napus HOM05D005811 ORTHO05D007070 3.4e-36 154.8 104 78.8
BraA06t25121Z Brassica rapa HOM05D005811 ORTHO05D007070 3.4e-36 154.8 104 78.8
C03p71300 Brassica napus HOM05D005811 ORTHO05D007070 7.6e-36 153.7 104 77.9
BolC3t19415H Brassica oleracea HOM05D005811 ORTHO05D007070 7.6e-36 153.7 104 77.9
Sp5g14660 Schrenkiella parvula HOM05D005811 ORTHO05D007070 1.3e-35 152.9 125 65.6
BcaC01g01857 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-35 151.4 104 76.9
BcaC01g01858 Brassica carinata HOM05D005811 ORTHO05D007070 3.8e-35 151.4 104 76.9
Thhalv10010831m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 5.0e-35 151.0 116 69.8
BcaB01g00949 Brassica carinata HOM05D005811 ORTHO05D007070 1.9e-34 149.1 104 76.0
BcaB02g10703 Brassica carinata HOM05D005811 ORTHO05D007070 7.2e-34 147.1 103 76.7
A06p27110 Brassica napus HOM05D005811 ORTHO05D007070 2.7e-33 145.2 103 74.8
BraA06t25647Z Brassica rapa HOM05D005811 ORTHO05D007070 2.7e-33 145.2 103 74.8
BcaC01g02249 Brassica carinata HOM05D005811 ORTHO05D007070 7.9e-33 143.7 103 72.8
BolC3t19011H Brassica oleracea HOM05D005811 ORTHO05D007070 7.9e-33 143.7 103 72.8
BNapus_Darmor_BZH_scaffold_82p00020 Brassica napus HOM05D005811 ORTHO05D007070 1.8e-32 142.5 103 71.8
Aa31LG4G15980 Aethionema arabicum HOM05D005811 ORTHO05D007070 1.3e-30 136.3 104 73.1
Thhalv10015099m.g Eutrema salsugineum HOM05D005811 ORTHO05D007070 5.5e-26 120.9 99 71.7
CARHR272810 Cardamine hirsuta HOM05D005811 ORTHO05D007070 1.2e-25 119.8 98 70.4
BcaC04g19852 Brassica carinata HOM05D005811 ORTHO05D007070 7.9e-25 117.1 98 68.4
BcaC04g19853 Brassica carinata HOM05D005811 ORTHO05D007070 7.9e-25 117.1 98 68.4
A10p15470 Brassica napus HOM05D005811 ORTHO05D007070 1.4e-24 116.3 98 68.4
BolC9t57959H Brassica oleracea HOM05D005811 ORTHO05D007070 1.4e-24 116.3 98 68.4
BraA10t43688Z Brassica rapa HOM05D005811 ORTHO05D007070 1.4e-24 116.3 98 68.4
THA.LOC104799405 Tarenaya hassleriana HOM05D005811 ORTHO05D007070 3.0e-24 115.2 94 64.9
Sp6g20560 Schrenkiella parvula HOM05D005811 ORTHO05D007070 3.9e-24 114.8 98 68.4
C09p51020 Brassica napus HOM05D005811 ORTHO05D007070 8.8e-24 113.6 98 67.3
Ciclev10029657m.g Citrus clementina HOM05D005811 ORTHO05D007070 4.8e-22 107.8 100 58.0
Gohir.A05G089600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 2.6e-20 102.1 101 54.5
Gorai.009G093000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.3e-19 99.8 101 53.5
Gohir.D05G090500 Gossypium hirsutum HOM05D005811 ORTHO05D007070 6.5e-19 97.4 101 52.5
Lj6g0027141 Lotus japonicus HOM05D005811 ORTHO05D007070 3.2e-18 95.1 94 54.3
Cpa.g.sc112.49 Carica papaya HOM05D005811 ORTHO05D007070 7.2e-18 94.0 94 55.3
Glyma.18G065900 Glycine max HOM05D005811 ORTHO05D007070 1.6e-17 92.8 93 50.5
VMungo0540G1301 Vigna mungo HOM05D005811 ORTHO05D007070 4.7e-17 91.3 93 50.5
Duzib150G1392 Durio zibethinus HOM05D005811 ORTHO05D007070 1.8e-16 89.4 93 53.8
Duzib170G0110 Durio zibethinus HOM05D005811 ORTHO05D007070 3.0e-16 88.6 93 51.6
Sc06g0008440 Simmondsia chinensis HOM05D005811 ORTHO05D007070 3.9e-16 88.2 93 53.8
Manes.02G121312 Manihot esculenta HOM05D005811 ORTHO05D007070 5.1e-16 87.8 100 49.0
Duzib168G1366 Durio zibethinus HOM05D005811 ORTHO05D007070 6.7e-16 87.4 94 51.1
Haze_24267 Corylus avellana HOM05D005811 ORTHO05D007070 8.8e-16 87.0 100 49.0
TPR.G13272 Trifolium pratense HOM05D005811 ORTHO05D007070 8.8e-16 87.0 96 51.0
Thecc.09G304900 Theobroma cacao HOM05D005811 ORTHO05D007070 1.1e-15 86.7 93 50.5
Phvul.006G065100 Phaseolus vulgaris HOM05D005811 ORTHO05D007070 2.0e-15 85.9 93 49.5
TWI75G0861 Tripterygium wilfordii HOM05D005811 ORTHO05D007070 2.0e-15 85.9 93 50.5
Carub.0008s1950 Capsella rubella HOM05D005811 ORTHO05D007070 2.6e-15 85.5 59 74.6
Potri.001G249600 Populus trichocarpa HOM05D005811 ORTHO05D007070 3.3e-15 85.1 93 52.7
CiPaw.13G080400 Carya illinoinensis HOM05D005811 ORTHO05D007070 9.7e-15 83.6 94 51.1
Sabra16G0151600 Salix brachista HOM05D005811 ORTHO05D007070 1.7e-14 82.8 93 50.5
MELO3C025865.2 Cucumis melo HOM05D005811 ORTHO05D007070 2.2e-14 82.4 93 48.4
Cfa011662 Carpinus fangiana HOM05D005811 ORTHO05D007070 2.8e-14 82.0 94 48.9
Prupe.6G060300 Prunus persica HOM05D005811 ORTHO05D007070 1.1e-13 80.1 100 50.0
Psat2g059240 Pisum sativum HOM05D005811 ORTHO05D007070 1.4e-13 79.7 99 51.5
Ah.15g099770 Amaranthus hybridus HOM05D005811 ORTHO05D007070 1.8e-13 79.3 92 47.8
MD11G1079700 Malus domestica HOM05D005811 ORTHO05D007070 1.8e-13 79.3 99 48.5
CsaV3_6G016350 Cucumis sativus L. HOM05D005811 ORTHO05D007070 2.4e-13 79.0 93 43.0
PGR102G1689 Punica granatum HOM05D005811 ORTHO05D007070 2.4e-13 79.0 93 48.4
ATR0618G101 Amborella trichopoda HOM05D005811 ORTHO05D007070 3.1e-13 78.6 100 48.0
MSTRG.18574 Avicennia marina HOM05D005811 ORTHO05D007070 5.3e-13 77.8 87 54.0
Sabra09G0031000 Salix brachista HOM05D005811 ORTHO05D007070 5.3e-13 77.8 94 48.9
Sed0022374 Sechium edule HOM05D005811 ORTHO05D007070 7.0e-13 77.4 93 48.4
ClCG02G019670 Citrullus lanatus HOM05D005811 ORTHO05D007070 2.0e-12 75.9 93 43.0
Gohir.A03G049700 Gossypium hirsutum HOM05D005811 ORTHO05D007070 2.0e-12 75.9 93 44.1
Nn2g13640 Nelumbo nucifera HOM05D005811 ORTHO05D007070 2.0e-12 75.9 93 45.2
CANSAT54G2446 Cannabis sativa HOM05D005811 ORTHO05D007070 2.6e-12 75.5 95 49.5
AUR62020102 Chenopodium quinoa HOM05D005811 ORTHO05D007070 3.5e-12 75.1 91 45.1
TAR369G0215 Trochodendron aralioides HOM05D005811 ORTHO05D007070 3.5e-12 75.1 93 48.4
arahy.Tifrunner.gnm1.ann1.8DRC0W Arachis hypogaea HOM05D005811 ORTHO05D007070 5.9e-12 74.3 63 57.1
arahy.Tifrunner.gnm1.ann1.AMG8UC Arachis hypogaea HOM05D005811 ORTHO05D007070 5.9e-12 74.3 63 57.1
AUR62001678 Chenopodium quinoa HOM05D005811 ORTHO05D007070 5.9e-12 74.3 91 45.1
Ca_05589_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 5.9e-12 74.3 97 49.5
Medtr5g069990 Medicago truncatula HOM05D005811 ORTHO05D007070 5.9e-12 74.3 103 46.6
Solyc06g076790.1 Solanum lycopersicum HOM05D005811 ORTHO05D007070 5.9e-12 74.3 88 50.0
LjContig00155g0018843 Lotus japonicus HOM05D005811 ORTHO05D007070 7.7e-12 73.9 92 47.8
MD03G1073700 Malus domestica HOM05D005811 ORTHO05D007070 7.7e-12 73.9 99 47.5
Nn2g11406 Nelumbo nucifera HOM05D005811 ORTHO05D007070 7.7e-12 73.9 93 45.2
Hund04884 Selenicereus undatus HOM05D004319 ORTHO05D007070 7.7e-12 73.9 86 43.0
CAN.G394.109 Capsicum annuum HOM05D005811 ORTHO05D007070 1.0e-11 73.6 90 47.8
Dinv28620 Davidia involucrata HOM05D005811 ORTHO05D007070 1.3e-11 73.2 96 45.8
Gohir.D03G117600 Gossypium hirsutum HOM05D005811 ORTHO05D007070 1.3e-11 73.2 93 45.2
Gorai.003G124000 Gossypium raimondii HOM05D005811 ORTHO05D007070 1.3e-11 73.2 93 45.2
Manes.01G163700 Manihot esculenta HOM05D005811 ORTHO05D007070 1.7e-11 72.8 99 44.4
EL10Ac7g16131 Beta vulgaris HOM05D005811 ORTHO05D007070 2.9e-11 72.0 88 45.5
MBI14_g04429_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 3.8e-11 71.6 95 45.3
Glyma.11G176000 Glycine max HOM05D005811 ORTHO05D007070 5.0e-11 71.2 93 45.2
Lalb_Chr04g0252281 Lupinus albus HOM05D005811 ORTHO05D007070 5.0e-11 71.2 94 45.7
MBI06_g39483_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 6.5e-11 70.9 96 50.0
MBI06_g42850_MAGBIO Magnolia biondii HOM05D005811 ORTHO05D007070 6.5e-11 70.9 96 50.0
Lalb_Chr04g0252321 Lupinus albus HOM05D005811 ORTHO05D007070 8.5e-11 70.5 95 45.3
QL01p037422 Quercus lobata HOM05D005811 ORTHO05D007070 8.5e-11 70.5 62 51.6
Migut.D02091 Erythranthe guttata HOM05D005811 ORTHO05D007070 1.5e-10 69.7 73 52.1
Nitab4.5_0000010g0190 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.5e-10 69.7 77 50.6
Nitab4.5_0000102g0070 Nicotiana tabacum HOM05D005811 ORTHO05D007070 1.5e-10 69.7 83 50.6
PGSC0003DMG400004165 Solanum tuberosum HOM05D005811 ORTHO05D007070 2.5e-10 68.9 83 49.4
CiPaw.14G060800 Carya illinoinensis HOM05D005811 ORTHO05D007070 3.2e-10 68.6 95 40.0
DCAR_018965 Daucus carota HOM05D005811 ORTHO05D007070 3.2e-10 68.6 109 40.4
PGSC0003DMG400030440 Solanum tuberosum HOM05D005811 ORTHO05D007070 4.2e-10 68.2 71 52.1
Nitab4.5_0004144g0020 Nicotiana tabacum HOM05D005811 ORTHO05D007070 7.2e-10 67.4 77 48.1
Potri.009G043600 Populus trichocarpa HOM05D005811 ORTHO05D007070 1.2e-09 66.6 60 55.0
Medtr3g462990 Medicago truncatula HOM05D005811 ORTHO05D007070 2.1e-09 65.9 64 56.2
Actinidia34450 Actinidia chinensis HOM05D000731 ORTHO05D003068 2.7e-09 65.5 95 43.2
RcHm_v2.0_Chr5g0068741 Rosa chinensis HOM05D005811 ORTHO05D007070 2.7e-09 65.5 104 44.2
Peaxi162Scf01058g00001 Petunia axillaris HOM05D005811 ORTHO05D007070 3.6e-09 65.1 70 52.9
HPP92_012634 Vanilla planifolia HOM05D005811 ORTHO05D007070 8.0e-09 63.9 105 42.9
Aqoxy2G00950 Aquilegia oxysepala HOM05D005811 ORTHO05D007070 3.0e-08 62.0 100 40.0
Nn4g22044 Nelumbo nucifera HOM05D005811 ORTHO05D007070 3.0e-08 62.0 94 40.4
Lsat_1_v5_gn_8_71220 Lactuca sativa HOM05D005811 ORTHO05D007070 1.1e-07 60.1 87 41.4
PSO339G4375 Papaver somniferum HOM05D005811 ORTHO05D007070 1.5e-07 59.7 100 42.0
TPR.G24035 Trifolium pratense HOM05D005811 ORTHO05D007070 2.6e-07 58.9 97 41.2
Lalb_Chr10g0103291 Lupinus albus HOM05D005811 ORTHO05D007070 4.4e-07 58.2 61 45.9
SGA_v2.0_scaffold443G51693 Striga asiatica HOM05D005811 ORTHO05D007070 4.4e-07 58.2 45 62.2
FvH4_3g38260 Fragaria vesca HOM05D005811 ORTHO05D007070 5.7e-07 57.8 67 44.8
FAN11G0366 Fragaria x ananassa HOM05D005811 ORTHO05D007070 5.7e-07 57.8 67 44.8
FAN21G0983 Fragaria x ananassa HOM05D005811 ORTHO05D007070 7.5e-07 57.4 69 43.5
FAN16G2097 Fragaria x ananassa HOM05D005811 ORTHO05D007070 1.7e-06 56.2 67 43.3
Ca_14913_v3 Cicer arietinum L. HOM05D005811 ORTHO05D007070 4.8e-06 54.7 64 45.3
Sopen06g033180 Solanum pennellii HOM05D005811 ORTHO05D007070 4.8e-06 54.7 87 40.2
unitig_746.g26735 Utricularia gibba HOM05D005811 ORTHO05D007070 4.8e-06 54.7 71 45.1
Dinv14462 Davidia involucrata HOM05D005811 ORTHO05D007070 8.2e-06 53.9 62 43.5


User provided reference genes

Program Settings