Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 1.9e-191 672.5 389 100.0
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 5.5e-167 591.3 390 92.1
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.2e-161 573.5 391 88.2
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.5e-143 512.7 393 75.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 8.9e-141 504.2 396 80.8
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 4.1e-138 495.4 395 77.2
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 5.0e-136 488.4 393 71.8
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.8e-133 479.9 393 74.0
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 6.4e-131 471.5 393 74.0
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 1.3e-123 447.2 382 72.3
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 1.3e-120 437.2 393 66.9
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 1.3e-120 437.2 393 66.9
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 3.9e-120 435.6 393 66.7
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 8.9e-117 424.5 360 72.2
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.1e-114 417.5 393 64.6
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 5.4e-98 362.1 406 58.6
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.1e-87 327.8 393 56.2
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 2.1e-86 323.6 299 70.9
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 3.6e-73 279.6 396 49.2
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 7.5e-39 165.6 353 38.0
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 3.7e-38 163.3 361 37.4
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 4.5e-36 156.4 403 34.7
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 1.7e-35 154.5 336 38.4
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 1.1e-34 151.8 348 37.9
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 5.6e-34 149.4 428 34.3
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.6e-34 149.4 426 34.5
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 2.8e-33 147.1 442 32.1
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.0e-32 145.2 360 34.4
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.4e-32 144.8 356 32.9
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.4e-32 144.8 381 34.4
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 8.9e-32 142.1 366 34.7
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.2e-31 141.7 375 35.5
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 3.4e-31 140.2 380 36.3
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 4.4e-31 139.8 319 36.1
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 7.5e-31 139.0 385 34.5
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.9e-30 136.3 347 32.9
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 6.4e-30 136.0 446 33.0
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 6.4e-30 136.0 365 33.7
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.4e-29 134.8 320 36.6
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 5.4e-29 132.9 338 34.9
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 5.4e-29 132.9 413 33.7
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 7.0e-29 132.5 424 30.4
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 4.6e-28 129.8 263 36.1
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 5.9e-28 129.4 460 31.3
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 2.3e-27 127.5 421 33.7
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 5.6e-26 122.9 387 33.1
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 7.3e-26 122.5 428 33.6
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.8e-24 117.9 448 27.7
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 4.4e-23 113.2 421 29.7
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 7.5e-23 112.5 433 29.8
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.9e-22 110.5 275 33.5
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 2.9e-22 110.5 351 33.0
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 8.3e-22 109.0 399 30.3
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 1.9e-21 107.8 456 30.3
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 3.2e-21 107.1 424 30.7
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 7.0e-21 105.9 323 34.4
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 2.7e-20 104.0 372 30.1
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 3.5e-20 103.6 413 29.3
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 3.5e-20 103.6 347 32.3
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 7.8e-20 102.4 350 29.1
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 1.0e-19 102.1 354 31.6
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 3.0e-19 100.5 454 29.5
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 5.0e-19 99.8 366 31.4
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 6.6e-19 99.4 403 29.5
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 5.6e-18 96.3 397 29.0
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 9.5e-18 95.5 371 27.2
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 9.5e-18 95.5 469 29.6
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 2.8e-17 94.0 392 28.1
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 3.6e-17 93.6 486 25.9
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 8.1e-17 92.4 456 28.1
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.8e-16 91.3 185 34.6
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.8e-16 91.3 342 29.5
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 3.1e-16 90.5 185 35.7
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 2.6e-15 87.4 223 33.2
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 4.4e-15 86.7 301 29.9
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 9.8e-15 85.5 360 28.9
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 4.9e-14 83.2 323 30.7
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 8.3e-14 82.4 370 30.5
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 1.4e-13 81.6 381 29.4
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.9e-13 81.3 273 33.7
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 4.1e-13 80.1 424 26.7
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 5.4e-13 79.7 401 28.4
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 7.1e-13 79.3 292 29.8
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 2.7e-12 77.4 272 32.4
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 4.6e-12 76.6 179 35.2
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 4.6e-12 76.6 559 24.5
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 4.6e-12 76.6 330 27.0
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 6.0e-12 76.3 183 37.2
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.7e-11 74.7 170 38.8
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 2.3e-11 74.3 509 25.3
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 3.9e-11 73.6 343 28.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 3.9e-11 73.6 353 26.6
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 5.1e-11 73.2 358 27.7
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.5e-10 71.6 173 38.7
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 1.9e-10 71.2 166 39.8
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.9e-10 71.2 355 28.7
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 2.5e-10 70.9 439 26.9
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 4.3e-10 70.1 166 39.2
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 7.3e-10 69.3 389 27.2
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.1e-09 67.8 235 31.1
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.1e-08 65.5 164 39.6
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.1e-08 63.9 467 24.0
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.0e-07 61.2 434 23.5
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.6e-07 60.8 121 32.2
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 4.4e-07 60.1 180 30.6
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 5.8e-07 59.7 371 25.1
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.8e-07 59.7 120 39.2
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 2.9e-06 57.4 126 37.3
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 2.9e-06 57.4 126 37.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.9e-06 57.4 138 32.6
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 2.9e-06 57.4 316 25.9
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 6.4e-06 56.2 346 24.0
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 6.4e-06 56.2 456 22.6


User provided reference genes

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