Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G46613 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 3.2e-51 205.3 145 100.0
BcaC09g49758 Brassica carinata HOM05D008503 ORTHO05D001075 3.2e-27 125.6 159 69.2
C01p33250 Brassica napus HOM05D008503 ORTHO05D001075 4.2e-27 125.2 146 63.0
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 1.0e-25 120.6 148 59.5
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 2.3e-25 119.4 145 69.7
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 2.3e-25 119.4 146 58.9
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 2.3e-25 119.4 146 58.9
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 2.3e-25 119.4 146 58.9
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 2.3e-25 119.4 146 68.5
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 4.3e-24 115.2 146 69.9
Thhalv10014947m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 3.7e-23 112.1 150 64.0
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 6.2e-23 111.3 151 66.9
CARHR155200 Cardamine hirsuta HOM05D008503 ORTHO05D001075 2.6e-21 105.9 116 67.2
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 5.8e-21 104.8 149 63.8
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 1.1e-19 100.5 145 55.2
A02p07090 Brassica napus HOM05D008503 ORTHO05D001075 1.9e-19 99.8 145 58.6
BraA02t05789Z Brassica rapa HOM05D008503 ORTHO05D001075 1.9e-19 99.8 145 58.6
BcaC03g14006 Brassica carinata HOM05D008503 ORTHO05D001075 5.5e-19 98.2 145 65.5
C02p12440 Brassica napus HOM05D008503 ORTHO05D001075 5.5e-19 98.2 145 65.5
BcaB05g22516 Brassica carinata HOM05D008503 ORTHO05D001075 7.1e-19 97.8 160 50.0
BolC2t07344H Brassica oleracea HOM05D008503 ORTHO05D001075 9.3e-19 97.4 145 65.5
BcaB05g23545 Brassica carinata HOM05D008503 ORTHO05D001075 1.0e-17 94.0 86 69.8
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.8e-09 66.6 131 38.9
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 2.3e-09 66.2 131 38.9
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 8.8e-09 64.3 65 53.8
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 3.3e-08 62.4 64 57.8
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 3.3e-08 62.4 49 57.1
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 4.3e-08 62.0 120 39.2
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 4.3e-08 62.0 33 72.7
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 9.7e-08 60.8 81 45.7
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 1.3e-07 60.5 145 32.4
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.3e-07 60.5 141 35.5
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 1.3e-07 60.5 65 50.8
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-07 60.5 44 59.1
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-07 60.5 44 59.1
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.3e-07 60.5 44 59.1
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 1.7e-07 60.1 48 58.3
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 1.7e-07 60.1 45 64.4
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 2.8e-07 59.3 83 45.8
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 4.8e-07 58.5 39 61.5
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.1e-06 57.4 33 69.7
Lj2g0015207 Lotus japonicus HOM05D008941 ORTHO05D010842 1.1e-06 57.4 39 59.0
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 1.1e-06 57.4 77 49.4
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-06 57.4 29 75.9
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 1.1e-06 57.4 83 44.6
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.1e-06 57.4 75 45.3
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 1.4e-06 57.0 44 56.8
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.8e-06 56.6 33 69.7
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 1.8e-06 56.6 45 60.0
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 1.8e-06 56.6 37 62.2
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 2.4e-06 56.2 34 64.7
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.4e-06 56.2 34 64.7
Medtr5g023120 Medicago truncatula HOM05D008941 ORTHO05D010842 3.1e-06 55.8 30 63.3
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 3.1e-06 55.8 33 66.7
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 3.1e-06 55.8 37 62.2
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 3.1e-06 55.8 44 61.4
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 4.1e-06 55.5 150 36.0
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 4.1e-06 55.5 150 36.0
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 4.1e-06 55.5 65 46.2
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 4.1e-06 55.5 57 47.4
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 6.9e-06 54.7 50 50.0
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 6.9e-06 54.7 30 60.0
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 9.1e-06 54.3 60 50.0
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 9.1e-06 54.3 60 50.0
HanXRQChr01g0027111 Helianthus annuus HOM05D008503 ORTHO05D001075 9.1e-06 54.3 36 63.9
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 9.1e-06 54.3 62 50.0


User provided reference genes

Program Settings