Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 0.0e+00 1490.7 805 100.0
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 0.0e+00 1448.7 805 96.1
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 0.0e+00 1421.8 805 94.4
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 0.0e+00 1395.6 803 92.7
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1390.9 805 91.3
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 0.0e+00 1382.5 805 91.6
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1364.4 805 90.8
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1364.0 805 90.7
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 0.0e+00 1348.6 821 88.8
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 0.0e+00 1345.5 801 89.3
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 0.0e+00 1334.3 848 86.0
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 0.0e+00 1244.2 802 82.4
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1226.1 805 83.5
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 8.7e-308 1060.1 819 68.1
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 3.3e-307 1058.1 819 68.4
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 2.0e-304 1048.9 816 67.5
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 1.1e-302 1043.1 820 67.8
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 1.9e-302 1042.3 819 67.3
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.2e-302 1041.6 821 66.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 3.2e-302 1041.6 821 67.0
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 5.5e-302 1040.8 821 66.6
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.2e-301 1039.6 817 68.3
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 2.7e-301 1038.5 817 67.1
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 1.9e-299 1032.3 818 67.0
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 2.5e-299 1031.9 856 65.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 1.0e-295 1020.0 820 66.2
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 1.3e-295 1019.6 819 66.3
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 2.2e-295 1018.8 816 67.6
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.1e-294 1016.5 819 66.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.6e-293 1011.1 819 65.9
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.0e-292 1010.0 819 66.2
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 2.5e-291 1005.4 819 65.4
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 2.4e-289 998.8 820 65.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.5e-288 996.1 826 65.1
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.7e-287 992.6 785 67.1
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.9e-287 991.9 821 65.2
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.8e-287 991.5 822 65.6
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.2e-285 986.5 805 65.8
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 7.9e-285 983.8 819 64.8
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 1.3e-284 983.0 821 64.6
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 7.4e-283 977.2 817 64.5
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.3e-282 976.5 822 64.0
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 4.8e-282 974.5 816 65.1
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.1e-281 973.4 819 64.3
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 4.5e-280 968.0 821 63.3
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 7.7e-280 967.2 822 64.2
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 1.0e-279 966.8 821 63.2
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 6.5e-279 964.1 819 63.0
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.4e-278 963.0 878 61.4
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 2.5e-278 962.2 843 61.7
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 5.5e-278 961.1 821 63.7
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.2e-278 960.7 821 63.7
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.2e-277 959.9 788 65.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.4e-276 956.4 814 62.9
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.5e-275 953.0 819 63.2
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 2.0e-275 952.6 819 62.9
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 7.4e-275 950.7 813 62.5
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 9.7e-275 950.3 820 62.6
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 9.7e-275 950.3 824 62.4
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 4.8e-274 948.0 819 61.9
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 6.3e-274 947.6 814 62.8
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 8.2e-274 947.2 819 62.3
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 3.1e-273 945.3 818 62.2
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 1.2e-272 943.3 820 62.3
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 3.4e-272 941.8 821 62.1
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 1.0e-271 940.3 821 61.1
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.7e-271 939.5 742 67.7
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 8.5e-271 937.2 819 61.9
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.9e-270 936.0 814 62.8
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 7.2e-270 934.1 828 61.2
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.2e-269 933.3 841 61.1
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 2.3e-268 929.1 827 62.3
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 8.8e-268 927.2 846 59.6
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 4.8e-266 921.4 822 61.1
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.1e-265 920.2 816 60.7
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 5.2e-260 901.4 807 61.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 4.4e-259 898.3 816 60.7
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 4.4e-259 898.3 822 60.3
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 7.5e-259 897.5 742 64.2
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 9.7e-259 897.1 817 60.7
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 2.8e-258 895.6 817 60.6
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 4.8e-258 894.8 754 63.9
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 7.0e-257 891.0 816 60.0
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.2e-255 885.9 833 60.1
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.5e-254 882.5 926 55.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 5.2e-252 874.8 861 57.1
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 5.7e-251 871.3 809 59.1
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 4.1e-249 865.1 815 59.0
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.4e-244 850.1 816 57.2
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.3e-242 843.6 821 56.3
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 6.1e-237 824.7 530 85.8
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 2.2e-226 789.6 818 57.2
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 3.9e-223 778.9 820 53.7
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.2e-219 767.3 676 62.6
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 2.4e-209 733.0 862 48.7
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 7.6e-203 711.4 662 59.5
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 8.2e-181 638.3 594 58.6
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 4.1e-164 582.8 826 43.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 2.6e-163 580.1 767 43.9
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 8.5e-162 575.1 750 44.8
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 8.8e-159 565.1 624 53.2
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.8e-157 559.3 465 72.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 5.3e-140 502.7 829 39.1
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.2e-139 501.5 379 67.8
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 1.2e-139 501.5 820 38.0
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.7e-136 490.3 810 38.1
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.8e-132 477.6 324 73.8
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.2e-127 459.5 316 79.7
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 5.0e-122 443.0 492 51.6
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.3e-119 434.1 405 58.8
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.3e-101 375.2 269 68.8
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 6.0e-99 366.3 253 71.5
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 5.2e-87 326.6 275 57.5
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.6e-73 279.3 241 63.9
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 8.5e-53 213.0 794 25.7
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.8e-50 205.3 119 89.9
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.7e-48 198.7 353 39.1
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.4e-39 169.1 162 54.9
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.7e-37 162.2 122 68.9
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 3.8e-37 161.0 833 23.2
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 8.5e-37 159.8 222 43.7
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 8.5e-29 133.3 92 67.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.5e-28 132.5 101 67.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.4e-23 115.2 241 34.9
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.1e-23 114.4 235 42.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.0e-21 109.8 69 82.6
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 2.5e-20 105.1 111 52.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 2.7e-19 101.7 69 68.1
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 2.7e-19 101.7 69 68.1
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 1.8e-18 99.0 68 66.2
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.0e-18 98.2 141 41.1
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 7.0e-15 87.0 86 51.2
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 7.0e-15 87.0 61 73.8
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.2e-11 76.3 68 60.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 5.2e-10 70.9 86 45.3
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 6.3e-08 63.9 47 68.1


User provided reference genes

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