Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 1.4e-181 639.4 312 100.0
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.9e-165 585.9 301 94.4
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 2.0e-159 565.8 303 89.8
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 2.4e-152 542.3 313 85.6
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 3.5e-148 528.5 312 84.3
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 1.1e-146 523.5 296 85.5
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 4.5e-143 511.5 312 82.1
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 7.6e-143 510.8 312 82.7
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 9.9e-143 510.4 312 82.4
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 6.4e-142 507.7 312 82.4
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 6.4e-142 507.7 312 82.4
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 7.6e-135 484.2 313 78.6
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 3.5e-132 475.3 385 65.5
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 3.1e-128 462.2 300 75.3
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 4.6e-116 421.8 287 69.0
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 1.7e-113 413.3 304 66.1
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 8.2e-113 411.0 297 66.7
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 1.8e-112 409.8 288 67.4
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 3.1e-112 409.1 288 66.7
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 4.1e-112 408.7 289 67.8
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 6.9e-112 407.9 290 66.6
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 9.1e-112 407.5 289 68.2
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 9.1e-112 407.5 283 68.2
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 1.2e-111 407.1 292 67.8
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 1.5e-111 406.8 303 67.0
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 2.0e-111 406.4 289 67.1
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 2.0e-111 406.4 301 63.5
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 4.5e-111 405.2 287 67.2
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 5.9e-111 404.8 301 63.1
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 5.9e-111 404.8 288 65.6
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 7.7e-111 404.4 288 66.7
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 1.7e-110 403.3 303 61.7
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.7e-110 403.3 287 66.9
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 2.9e-110 402.5 292 66.4
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 8.5e-110 401.0 290 66.2
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 1.4e-109 400.2 299 66.2
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 1.9e-109 399.8 300 63.3
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 5.5e-109 398.3 287 65.9
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 9.4e-109 397.5 288 66.0
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 1.2e-108 397.1 294 66.0
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 2.7e-108 396.0 301 64.8
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 4.7e-108 395.2 302 63.9
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 4.7e-108 395.2 294 64.6
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 1.0e-107 394.0 304 59.9
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 1.4e-107 393.7 293 66.2
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 1.8e-107 393.3 296 63.9
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 1.8e-107 393.3 296 64.2
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 1.8e-107 393.3 288 64.9
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.3e-107 392.9 296 63.9
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 3.9e-107 392.1 290 65.9
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 8.8e-107 391.0 288 65.6
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.0e-106 389.8 294 64.3
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 5.7e-106 388.3 287 64.5
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 5.7e-106 388.3 298 64.4
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 5.7e-106 388.3 292 64.0
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 7.4e-106 387.9 287 64.1
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 7.4e-106 387.9 287 64.1
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 9.7e-106 387.5 294 62.9
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 9.7e-106 387.5 296 62.5
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 2.8e-105 386.0 297 63.0
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 2.8e-105 386.0 325 60.9
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 3.7e-105 385.6 308 61.0
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 4.8e-105 385.2 287 63.8
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 1.1e-104 384.0 296 62.2
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 4.1e-104 382.1 283 65.4
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 4.1e-104 382.1 290 63.4
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 4.1e-104 382.1 299 62.9
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 1.6e-103 380.2 287 63.1
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 2.0e-103 379.8 300 63.3
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 1.7e-102 376.7 289 61.9
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 3.8e-102 375.6 338 55.6
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 5.0e-102 375.2 321 58.3
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 1.9e-101 373.2 289 64.0
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 3.2e-101 372.5 292 63.4
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 9.4e-101 370.9 292 60.6
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 1.6e-100 370.2 285 59.3
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 2.1e-100 369.8 295 61.0
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 1.0e-99 367.5 293 61.1
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 5.7e-98 361.7 299 58.9
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 2.8e-97 359.4 303 59.4
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.1e-96 357.5 301 59.1
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 2.4e-96 356.3 276 62.7
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 3.1e-96 355.9 294 60.5
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 3.1e-96 355.9 293 62.1
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 3.1e-96 355.9 295 58.6
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 1.0e-91 340.9 285 59.3
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 5.4e-88 328.6 288 57.6
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 2.2e-86 323.2 290 55.9
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.5e-85 318.5 270 59.6
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.8e-84 316.2 283 55.8
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.7e-84 315.5 286 55.9
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.8e-83 313.5 290 53.1
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 3.0e-83 312.8 231 65.4
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 5.2e-83 312.0 282 55.7
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 1.2e-82 310.8 286 55.2
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 2.0e-82 310.1 288 55.2
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 2.2e-81 306.6 219 68.0
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 2.8e-81 306.2 283 55.1
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.1e-80 304.3 212 74.1
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 1.2e-76 290.8 205 65.4
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 1.5e-74 283.9 261 54.0
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 7.0e-72 275.0 442 39.4
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.2e-66 257.7 300 47.7
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 2.0e-66 256.9 181 64.6
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.2e-64 249.6 292 46.6
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 2.7e-63 246.5 351 39.9
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 7.1e-56 221.9 163 62.6
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 2.5e-53 213.4 203 53.7
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 1.6e-52 210.7 173 58.4
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 1.7e-33 147.5 109 65.1
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.2e-33 147.1 143 53.1
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 3.8e-33 146.4 108 67.6
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 1.0e-30 138.3 444 26.1
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 2.0e-26 124.0 204 37.3
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 8.4e-25 118.6 265 30.2
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 2.8e-20 103.6 71 70.4
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 5.8e-18 95.9 55 87.3
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 1.0e-14 85.1 67 56.7
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 8.7e-14 82.0 60 66.7
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.4e-11 74.7 53 67.9


User provided reference genes

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