Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 5.1e-218 760.8 377 100.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 3.9e-202 708.0 373 93.8
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 3.4e-190 668.3 376 88.6
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.3e-189 666.4 376 88.3
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 2.5e-188 662.1 377 87.3
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 5.1e-186 654.4 377 86.5
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 8.8e-186 653.7 377 86.5
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.1e-185 653.3 377 86.5
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.1e-185 653.3 377 86.5
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 2.6e-185 652.1 377 86.2
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 4.1e-183 644.8 372 86.0
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 5.9e-174 614.4 387 79.1
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 1.2e-158 563.5 307 89.6
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.9e-156 556.2 384 70.8
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 3.6e-147 525.4 363 71.6
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 6.2e-147 524.6 359 70.8
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 2.3e-146 522.7 373 68.4
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 5.2e-146 521.5 351 73.5
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 8.9e-146 520.8 336 73.2
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.9e-144 515.8 357 70.6
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 8.3e-144 514.2 354 70.9
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 2.4e-143 512.7 382 67.8
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 4.1e-143 511.9 356 69.9
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 5.4e-143 511.5 356 69.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 7.0e-143 511.1 378 67.5
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 7.0e-143 511.1 354 68.9
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.2e-142 510.4 363 69.1
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 1.2e-142 510.4 358 70.1
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 6.0e-142 508.1 358 69.3
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 7.8e-142 507.7 377 68.2
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.0e-141 507.3 383 65.5
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 6.6e-141 504.6 347 72.3
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 1.5e-140 503.4 379 64.9
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 2.5e-140 502.7 343 71.4
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 4.3e-140 501.9 371 65.5
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 7.3e-140 501.1 361 67.6
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 9.5e-140 500.7 350 69.1
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-139 500.4 379 64.6
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 4.7e-139 498.4 359 68.0
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.2e-139 498.0 348 70.4
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 6.2e-139 498.0 369 68.0
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.4e-138 496.9 351 68.4
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-138 496.9 381 66.1
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 1.8e-138 496.5 340 70.3
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 2.3e-138 496.1 338 72.2
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 2.3e-138 496.1 372 64.5
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 3.1e-138 495.7 353 66.9
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 8.9e-138 494.2 373 68.1
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 1.5e-137 493.4 370 64.9
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 3.4e-137 492.3 363 67.8
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 4.4e-137 491.9 358 67.9
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 4.4e-137 491.9 379 64.9
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.8e-137 491.5 358 67.0
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.8e-137 491.5 363 66.9
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 1.3e-136 490.3 359 67.4
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 1.3e-136 490.3 379 64.6
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.7e-136 490.0 360 66.9
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.9e-136 488.4 344 67.7
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.4e-136 488.0 357 69.2
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.3e-136 487.6 389 62.7
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 1.1e-135 487.3 350 69.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.9e-135 486.5 368 63.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.9e-135 486.5 381 66.1
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 4.1e-135 485.3 377 66.0
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 4.1e-135 485.3 370 66.8
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 9.2e-135 484.2 363 64.5
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 9.2e-135 484.2 367 65.1
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.2e-134 483.8 352 67.9
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 2.7e-134 482.6 363 66.4
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.5e-134 482.3 344 68.3
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 6.0e-134 481.5 365 66.0
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 7.8e-134 481.1 378 66.1
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.0e-133 480.7 370 63.5
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.1e-132 477.2 354 67.2
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.9e-132 476.5 362 63.3
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 5.6e-132 474.9 352 65.6
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 7.3e-132 474.6 380 62.4
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 9.5e-132 474.2 367 64.6
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.2e-131 473.8 364 63.7
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 1.6e-131 473.4 343 67.1
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.6e-131 473.4 359 64.6
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 3.6e-131 472.2 356 64.9
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.8e-130 469.9 396 61.1
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 3.1e-130 469.2 352 64.2
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 4.0e-130 468.8 352 65.3
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 8.9e-130 467.6 377 62.3
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.6e-129 466.1 352 63.9
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.6e-129 466.1 345 66.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 4.4e-129 465.3 343 65.9
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 8.4e-128 461.1 372 60.5
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.4e-127 460.3 387 61.5
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.4e-127 460.3 413 59.8
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 1.9e-127 459.9 366 60.4
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 4.1e-127 458.8 338 66.3
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 2.1e-126 456.4 348 64.4
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 3.6e-123 445.7 374 61.0
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.1e-122 442.6 406 57.1
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.8e-122 441.4 349 63.9
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 2.0e-121 439.9 359 60.4
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.4e-119 433.7 338 63.3
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 1.9e-119 433.3 229 91.3
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.5e-118 429.1 358 61.5
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.5e-118 429.1 358 59.8
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-117 427.6 396 57.3
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.7e-117 426.8 411 54.3
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 2.5e-116 422.9 331 65.3
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.3e-116 422.5 338 61.8
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.1e-115 419.9 370 61.6
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.2e-115 418.3 398 56.8
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 6.9e-114 414.8 326 62.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 6.4e-112 408.3 364 58.2
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 6.4e-112 408.3 300 66.7
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.2e-111 405.6 365 58.9
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 2.1e-110 403.3 362 56.9
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 4.6e-110 402.1 341 58.4
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 4.6e-110 402.1 360 58.1
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.1e-109 398.7 507 46.7
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 6.6e-109 398.3 355 59.2
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 1.1e-108 397.5 370 55.9
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.3e-108 396.0 353 57.5
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.3e-107 394.0 541 42.5
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.3e-106 388.7 346 59.2
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.9e-106 388.3 380 54.5
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.2e-104 383.3 400 52.8
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.8e-98 363.6 269 63.9
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 5.8e-97 358.6 246 72.0
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 9.3e-95 351.3 248 69.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 8.7e-93 344.7 362 50.6
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.5e-92 343.2 362 47.8
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.1e-91 340.1 377 49.6
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.7e-91 339.3 293 59.7
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 7.6e-89 331.6 270 62.6
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 7.6e-89 331.6 339 53.4
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 2.1e-86 323.6 238 66.4
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 4.6e-86 322.4 255 63.5
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 1.1e-82 311.2 345 48.7
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 5.7e-76 288.9 203 69.0
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.4e-74 284.3 278 54.7
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 1.9e-71 273.9 200 67.0
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.5e-68 264.2 360 43.3
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 6.3e-67 258.8 519 34.1
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.5e-63 246.9 346 43.1
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 2.7e-54 216.9 291 43.6
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 3.0e-53 213.4 258 46.1
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 7.5e-52 208.8 190 52.6
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.6e-40 169.1 172 51.7
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 3.3e-39 166.8 307 33.6
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 4.3e-39 166.4 331 30.8
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 1.2e-38 164.9 135 63.7
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.6e-38 164.5 382 30.9
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.4e-28 130.2 114 53.5
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 9.8e-28 128.6 93 69.9
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 2.2e-19 100.9 81 63.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 2.3e-16 90.9 63 65.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 3.3e-15 87.0 56 67.9
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 2.8e-14 84.0 44 84.1
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.4e-12 76.6 43 81.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 3.5e-09 67.0 130 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 7.8e-09 65.9 60 48.3


User provided reference genes

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