Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 6.7e-64 247.3 134 100.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.2e-62 242.3 134 97.0
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.1e-61 238.0 136 91.9
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 7.0e-61 237.3 135 91.9
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 9.1e-61 236.9 136 91.2
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.6e-60 236.1 136 89.7
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.6e-60 236.1 136 89.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 4.5e-60 234.6 136 89.7
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 4.5e-60 234.6 136 89.7
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 4.5e-60 234.6 136 89.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 7.7e-60 233.8 134 96.3
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-58 229.9 136 87.5
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-56 222.2 136 85.3
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-56 222.2 136 85.3
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 4.4e-55 218.0 136 83.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.7e-54 214.9 135 83.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 3.1e-53 211.8 135 80.0
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.1e-50 203.4 116 84.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.2e-50 201.8 116 84.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 3.2e-50 201.8 116 85.3
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.5e-50 201.1 116 83.6
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 9.4e-50 200.3 116 83.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.2e-49 199.9 116 82.8
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.6e-49 199.5 116 84.5
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 2.1e-49 199.1 129 75.2
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.1e-49 199.1 115 83.5
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.1e-49 199.1 116 84.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.7e-49 198.7 128 77.3
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.6e-49 198.4 116 81.9
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.6e-49 198.4 116 81.9
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 4.7e-49 198.0 116 83.6
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 6.1e-49 197.6 116 81.9
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 6.1e-49 197.6 116 84.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 6.1e-49 197.6 116 82.8
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 8.0e-49 197.2 116 81.9
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 8.0e-49 197.2 116 84.5
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.0e-48 196.8 116 81.9
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.0e-48 196.8 116 81.9
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.4e-48 196.4 116 81.0
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.8e-48 196.1 116 81.0
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.8e-48 196.1 116 81.9
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.8e-48 196.1 116 81.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.3e-48 195.7 116 82.8
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.0e-48 195.3 116 82.8
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 4.0e-48 194.9 116 81.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 5.2e-48 194.5 116 81.9
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 6.8e-48 194.1 116 81.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 6.8e-48 194.1 116 79.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 1.5e-47 193.0 116 81.0
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-47 193.0 116 81.0
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.0e-47 192.6 116 81.0
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.6e-47 192.2 116 79.3
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 2.6e-47 192.2 116 80.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 3.4e-47 191.8 116 77.6
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 3.4e-47 191.8 116 83.6
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 4.4e-47 191.4 116 80.2
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 5.7e-47 191.0 116 77.6
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 7.5e-47 190.7 116 78.4
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 9.8e-47 190.3 116 77.6
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 9.8e-47 190.3 116 78.4
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.3e-46 189.9 116 77.6
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-46 189.9 116 80.2
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.7e-46 189.5 116 77.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.7e-46 189.5 116 77.6
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-46 189.1 116 79.3
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.8e-46 188.7 116 78.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 8.3e-46 187.2 115 77.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.3e-46 187.2 116 79.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-45 186.8 114 79.8
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-45 186.8 116 75.9
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-45 186.4 114 78.9
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.4e-45 186.4 116 77.6
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.8e-45 186.0 129 72.9
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 3.1e-45 185.3 114 78.9
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.1e-45 185.3 116 76.7
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 3.1e-45 185.3 113 78.8
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 3.1e-45 185.3 110 78.2
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.1e-45 184.9 129 72.1
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.4e-45 184.5 134 76.9
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 5.4e-45 184.5 116 76.7
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.4e-45 184.5 116 75.9
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.2e-44 183.3 116 76.7
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.6e-44 183.0 116 78.4
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.6e-44 183.0 116 75.9
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.0e-44 182.6 114 75.4
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.7e-44 182.2 116 74.1
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 5.9e-44 181.0 116 75.9
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 5.9e-44 181.0 116 74.1
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.7e-44 180.6 114 74.6
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.3e-43 179.9 104 85.6
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.3e-43 179.9 116 75.0
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.7e-43 179.5 105 81.0
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.7e-43 179.5 116 75.9
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.7e-43 179.5 116 75.0
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.8e-43 178.3 114 75.4
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.0e-43 177.9 116 75.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-42 176.8 116 75.9
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 4.2e-42 174.9 116 70.7
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 9.5e-42 173.7 108 77.8
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.8e-41 172.2 119 73.1
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 3.6e-41 171.8 98 89.8
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 3.6e-41 171.8 98 89.8
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 6.1e-41 171.0 116 75.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.0e-40 170.2 118 71.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.3e-40 169.1 99 85.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.2e-40 167.9 98 86.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.2e-39 166.8 116 67.2
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.6e-39 165.6 110 75.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.4e-39 165.2 116 69.0
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 4.4e-39 164.9 114 71.9
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.2e-38 162.5 116 70.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.9e-38 161.4 98 79.6
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.4e-37 159.8 100 74.0
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.4e-37 159.8 116 69.8
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.4e-37 159.8 114 70.2
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.8e-37 159.5 98 78.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.2e-37 158.7 96 81.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.2e-36 156.8 116 68.1
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 7.8e-36 154.1 90 78.9
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.0e-35 151.4 95 78.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.1e-34 150.2 116 65.5
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.9e-34 149.4 104 70.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.1e-32 142.1 116 65.5
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.9e-32 140.6 86 77.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.4e-31 138.7 97 68.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 3.4e-31 138.7 117 60.7
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 4.4e-31 138.3 93 72.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 7.5e-31 137.5 117 60.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.4e-29 132.5 78 78.2
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.4e-29 131.3 102 66.7
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 7.0e-29 131.0 111 57.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.6e-28 129.8 116 60.3
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 2.0e-28 129.4 106 60.4
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 6.0e-28 127.9 76 77.6
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-27 125.6 84 75.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 3.9e-27 125.2 76 73.7
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 3.9e-27 125.2 116 59.5
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 8.6e-27 124.0 116 51.7
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 5.6e-26 121.3 111 54.1
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 9.5e-26 120.6 88 70.5
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.6e-25 119.8 115 54.8
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 1.6e-25 119.8 110 53.6
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 3.6e-25 118.6 112 51.8
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 6.2e-25 117.9 87 59.8
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.1e-25 117.5 112 56.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 3.1e-24 115.5 112 50.9
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 4.0e-24 115.2 115 50.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.2e-24 114.8 115 52.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 9.8e-23 110.5 98 57.1
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.9e-21 106.3 122 49.2
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.1e-21 105.1 76 75.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.1e-21 105.1 61 85.2
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.6e-20 103.2 126 45.2
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.4e-15 85.5 52 73.1
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 1.2e-09 67.0 77 46.8
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 6.2e-09 64.7 35 88.6
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.5e-07 60.1 52 51.9
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 33.3
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.8e-06 55.5 111 36.0
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 3.8e-06 55.5 111 32.4
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 3.8e-06 55.5 111 34.2
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 8.4e-06 54.3 111 35.1


User provided reference genes

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