Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 0.0e+00 1095.9 566 100.0
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 0.0e+00 1077.0 566 97.5
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 2.1e-308 1061.6 566 95.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.0e-306 1055.0 566 95.2
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 7.5e-306 1053.1 566 95.2
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.0e-302 1042.7 567 94.7
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 2.1e-300 1035.0 564 93.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 9.1e-296 1019.6 566 91.2
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-293 1012.7 564 92.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 6.8e-291 1003.4 567 91.0
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.0e-290 1001.9 567 91.0
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.0e-290 1001.9 567 91.0
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.3e-289 999.2 567 90.7
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 2.8e-289 998.0 565 91.0
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.4e-288 995.7 565 90.6
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 5.6e-285 983.8 546 91.9
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.0e-279 965.3 568 85.6
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 7.6e-250 867.1 563 77.4
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 6.4e-249 864.0 563 78.0
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 6.4e-249 864.0 551 78.2
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.4e-248 862.8 566 77.4
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 2.4e-248 862.1 556 78.1
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 5.4e-248 860.9 563 77.8
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.6e-247 859.4 552 77.0
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 3.5e-247 858.2 552 78.3
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.0e-246 856.7 552 76.1
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 8.7e-246 853.6 558 76.9
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-245 852.4 558 76.7
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-245 852.4 563 75.8
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.3e-245 851.7 558 76.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.3e-245 851.7 563 75.7
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.6e-245 850.1 563 75.3
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 6.2e-244 847.4 569 74.3
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 6.2e-244 847.4 566 74.6
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 6.2e-244 847.4 560 76.1
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.1e-243 846.7 566 76.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.4e-243 845.5 552 77.4
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 5.3e-243 844.3 552 75.7
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.0e-243 843.6 566 75.8
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.2e-242 843.2 552 76.6
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.3e-241 839.7 561 74.5
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.7e-241 839.3 619 69.8
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.1e-240 836.6 552 75.2
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.4e-240 835.5 566 73.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 3.2e-240 835.1 560 74.8
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 3.2e-240 835.1 559 74.8
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.6e-239 832.8 566 73.5
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 6.0e-239 830.9 567 73.4
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 7.9e-239 830.5 550 74.7
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.0e-238 830.1 560 74.6
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.3e-238 829.7 550 74.7
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.3e-238 829.7 552 74.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.8e-238 829.3 581 73.3
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.3e-238 828.9 589 72.5
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.9e-238 828.2 552 74.3
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 8.7e-238 827.0 560 73.9
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 8.1e-236 820.5 580 71.9
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 8.1e-236 820.5 560 73.2
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 8.1e-236 820.5 553 74.7
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.1e-235 820.1 560 73.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.4e-235 819.7 562 73.0
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.8e-235 819.3 559 74.6
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 3.1e-235 818.5 558 73.7
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 5.3e-235 817.8 552 74.5
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 5.3e-235 817.8 561 72.9
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 5.3e-235 817.8 550 74.2
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.9e-235 817.4 554 74.2
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.5e-234 816.2 562 72.4
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.6e-234 815.5 554 74.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.6e-234 815.5 567 71.8
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 4.5e-234 814.7 556 73.0
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.7e-233 812.8 556 72.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 4.9e-233 811.2 555 72.3
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 8.4e-233 810.4 551 73.9
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.4e-232 809.7 559 72.1
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.2e-231 806.6 541 76.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.6e-231 806.2 551 73.3
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.6e-231 806.2 559 72.1
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 3.9e-230 801.6 580 69.1
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.9e-230 801.6 560 72.7
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 5.1e-230 801.2 555 71.9
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 5.1e-230 801.2 557 72.0
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 8.7e-230 800.4 534 73.8
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.9e-229 799.3 560 72.5
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 2.5e-229 798.9 565 71.7
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.5e-229 798.9 558 72.8
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 3.3e-229 798.5 551 72.8
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.3e-229 798.1 548 73.7
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 7.4e-229 797.3 564 71.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 7.4e-229 797.3 561 72.0
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-228 796.6 548 73.5
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.7e-228 795.0 570 70.7
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.7e-228 795.0 601 68.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 6.2e-228 794.3 556 71.2
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 6.2e-228 794.3 556 71.8
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.8e-227 792.7 550 71.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 4.1e-227 791.6 545 72.5
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 6.9e-227 790.8 563 72.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 7.9e-223 777.3 542 72.1
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.5e-221 773.1 613 66.6
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.3e-220 770.0 585 68.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.3e-220 767.7 602 66.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.8e-219 766.1 529 72.6
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.3e-219 764.6 536 70.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.9e-219 764.2 553 68.7
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.0e-218 762.7 551 70.6
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 3.2e-216 755.4 565 68.0
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.6e-215 753.1 548 67.5
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.6e-215 751.9 405 93.3
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 3.0e-214 748.8 517 71.8
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.9e-214 748.4 405 93.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 8.8e-214 747.3 570 67.7
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.5e-213 746.5 636 62.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.0e-210 736.1 563 68.7
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-209 733.4 549 67.2
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 2.2e-209 732.6 405 91.9
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 7.9e-207 724.2 561 65.1
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 3.9e-206 721.8 547 64.5
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.7e-201 706.4 484 72.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 8.5e-201 704.1 577 62.6
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 5.7e-197 691.4 443 77.4
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.4e-195 686.0 554 64.3
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.7e-191 672.5 475 70.1
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.0e-190 670.6 561 59.4
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 9.8e-189 664.1 498 64.5
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.2e-186 657.1 473 70.6
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 7.2e-184 647.9 542 59.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.2e-180 636.3 560 59.3
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.0e-166 589.0 409 71.4
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.4e-155 553.9 359 78.6
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.9e-147 526.9 357 72.0
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 4.4e-141 505.8 529 49.5
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 4.4e-141 505.8 546 48.7
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 5.3e-126 455.7 327 68.8
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.2e-117 427.9 269 79.2
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 7.4e-112 408.7 338 62.1
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.7e-95 353.2 220 76.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.4e-78 298.1 195 71.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.5e-75 288.1 197 77.2
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 4.3e-59 233.4 194 60.8
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.0e-52 210.7 138 75.4
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-49 199.1 152 65.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-44 185.3 147 64.6
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-41 174.9 117 69.2
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-41 172.6 186 52.7
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.7e-29 134.4 82 86.6
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 6.4e-23 113.2 94 61.7
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.2e-21 109.0 127 48.0
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.6e-21 108.6 81 61.7
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 3.5e-21 107.5 83 65.1
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.3e-20 105.5 93 57.0
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.6e-18 98.6 82 58.5
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 4.5e-08 63.9 64 51.6
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 8.4e-07 59.7 222 26.1


User provided reference genes

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