Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 5.4e-150 534.3 261 100.0
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 8.5e-55 218.0 212 59.9
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.1e-54 217.6 211 60.7
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 4.5e-48 195.7 209 56.0
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 2.9e-47 193.0 192 60.4
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 2.5e-46 189.9 209 56.5
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 4.4e-43 179.1 210 53.8
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 5.4e-41 172.2 194 54.1
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 5.4e-41 172.2 194 54.1
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 7.0e-41 171.8 188 56.9
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 4.5e-40 169.1 193 54.9
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 2.5e-38 163.3 195 53.3
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 2.5e-38 163.3 195 53.3
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 7.3e-38 161.8 212 49.5
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 4.0e-36 156.0 219 43.8
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 1.2e-35 154.5 210 47.6
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.9e-34 149.1 124 66.1
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 1.1e-33 147.9 211 46.9
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 5.4e-25 119.0 192 40.6
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 2.7e-24 116.7 221 36.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.0e-24 115.5 192 38.5
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 6.0e-24 115.5 192 38.5
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 6.0e-24 115.5 176 42.0
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 5.0e-23 112.5 184 42.4
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 8.6e-23 111.7 194 40.2
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.8e-20 104.0 77 59.7
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.3e-20 103.6 193 37.3
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.0e-20 102.8 205 34.1
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 4.0e-20 102.8 198 35.9
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.2e-20 102.4 174 39.7
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 8.9e-20 101.7 172 39.0
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 1.2e-19 101.3 174 39.1
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.5e-19 100.9 170 39.4
Thhalv10002930m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.0e-19 100.5 204 39.7
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 3.4e-19 99.8 191 37.2
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 3.4e-19 99.8 195 35.9
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 3.4e-19 99.8 174 38.5
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.4e-19 99.4 182 36.8
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 4.4e-19 99.4 184 38.6
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.3e-18 97.8 168 39.9
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 1.3e-18 97.8 202 34.2
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 1.7e-18 97.4 186 36.6
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.7e-18 97.4 193 36.8
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 2.2e-18 97.1 193 34.7
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 2.2e-18 97.1 175 37.7
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 3.7e-18 96.3 66 60.6
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 4.9e-18 95.9 183 35.0
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 8.3e-18 95.1 173 37.0
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 8.3e-18 95.1 183 37.7
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.1e-17 94.7 177 37.9
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 1.4e-17 94.4 204 35.8
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 1.9e-17 94.0 212 33.5
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 2.4e-17 93.6 167 37.7
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 2.4e-17 93.6 176 34.7
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.4e-17 93.6 72 58.3
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 4.1e-17 92.8 189 36.0
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.4e-17 92.4 166 38.0
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.4e-17 92.4 183 36.6
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.4e-17 92.4 225 32.4
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 5.4e-17 92.4 211 33.2
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 7.1e-17 92.0 164 34.8
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 9.2e-17 91.7 224 33.9
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 1.2e-16 91.3 183 34.4
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 2.7e-16 90.1 196 34.2
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 2.7e-16 90.1 173 34.7
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 4.6e-16 89.4 179 36.9
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 6.0e-16 89.0 169 38.5
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.0e-15 88.2 208 34.1
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.7e-15 87.4 164 38.4
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.7e-15 87.4 125 41.6
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 2.3e-15 87.0 165 35.2
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 3.9e-15 86.3 200 32.5
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 3.9e-15 86.3 161 35.4
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 3.9e-15 86.3 189 33.9
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 5.1e-15 85.9 123 37.4
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 5.1e-15 85.9 64 56.2
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 5.1e-15 85.9 180 34.4
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 5.1e-15 85.9 118 41.5
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 6.6e-15 85.5 183 31.7
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-14 84.7 67 52.2
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.1e-14 84.7 66 53.0
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.5e-14 84.3 181 34.3
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.5e-14 84.3 189 34.9
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 2.5e-14 83.6 112 39.3
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 2.5e-14 83.6 215 31.6
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.3e-14 83.2 180 34.4
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 5.6e-14 82.4 181 34.3
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.2e-13 81.3 160 35.0
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 1.6e-13 80.9 70 48.6
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.6e-13 80.9 201 32.8
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.6e-13 80.9 177 35.6
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.6e-13 80.9 185 35.7
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 2.1e-13 80.5 162 36.4
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 2.1e-13 80.5 159 33.3
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 6.2e-13 79.0 195 32.3
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 6.2e-13 79.0 175 34.3
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 6.2e-13 79.0 177 34.5
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 6.2e-13 79.0 158 32.9
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 6.2e-13 79.0 161 34.8
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 8.1e-13 78.6 177 35.0
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.1e-12 78.2 185 31.9
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.1e-12 76.6 50 58.0
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.1e-12 76.6 50 58.0
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 4.0e-12 76.3 86 44.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 5.2e-12 75.9 151 34.4
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 6.8e-12 75.5 158 34.2
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 8.9e-12 75.1 66 48.5
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.4e-11 73.2 106 40.6
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 4.4e-11 72.8 64 48.4
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 4.4e-11 72.8 87 44.8
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 7.6e-11 72.0 195 34.4
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 9.9e-11 71.6 130 33.1
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 2.2e-10 70.5 89 50.6
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 2.2e-10 70.5 121 34.7
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.9e-10 70.1 187 28.3
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.9e-09 67.4 54 51.9
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 2.4e-09 67.0 98 46.9
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 2.4e-09 67.0 184 29.9
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 7.1e-09 65.5 182 29.1
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 9.2e-09 65.1 210 31.0
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 1.6e-08 64.3 179 30.2
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 1.6e-08 64.3 77 39.0
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 6.0e-08 62.4 190 28.4
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 6.0e-08 62.4 88 33.0
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 7.8e-08 62.0 94 37.2
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 7.8e-08 62.0 172 30.2
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 7.8e-08 62.0 159 31.4
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.0e-07 61.6 57 50.9
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.7e-07 60.8 146 32.9
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 2.3e-07 60.5 141 32.6
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 3.9e-07 59.7 87 46.0
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 3.9e-07 59.7 87 46.0
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 3.9e-07 59.7 87 46.0
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 8.6e-07 58.5 112 31.2
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 8.6e-07 58.5 132 31.1
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 1.5e-06 57.8 119 29.4
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 3.3e-06 56.6 98 37.8
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 5.6e-06 55.8 63 50.8
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 5.6e-06 55.8 61 39.3
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 7.3e-06 55.5 180 28.9
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 9.6e-06 55.1 82 29.3


User provided reference genes

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