Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G32410 Arabidopsis thaliana HOM05D000759 ORTHO05D000574 1.0e-123 446.8 233 100.0
AL4G16180 Arabidopsis lyrata HOM05D000759 ORTHO05D000574 3.5e-100 368.6 206 92.2
Carub.0004s0463 Capsella rubella HOM05D000759 ORTHO05D000574 5.8e-95 351.3 212 87.3
AT2G25050 Arabidopsis thaliana HOM05D000759 ORTHO05D000574 2.9e-94 349.0 212 89.2
CARHR116660 Cardamine hirsuta HOM05D000759 ORTHO05D000574 1.7e-86 323.2 225 76.4
Sp4g04040 Schrenkiella parvula HOM05D000759 ORTHO05D000574 7.8e-84 314.3 210 79.0
A09p55950 Brassica napus HOM05D000759 ORTHO05D000574 1.4e-80 303.5 207 77.8
BraA09t40996Z Brassica rapa HOM05D000759 ORTHO05D000574 1.4e-80 303.5 207 77.8
BcaB08g35140 Brassica carinata HOM05D000759 ORTHO05D000574 5.2e-80 301.6 207 78.3
BcaC07g40895 Brassica carinata HOM05D000759 ORTHO05D000574 1.6e-76 290.0 207 75.8
C08p38930 Brassica napus HOM05D000759 ORTHO05D000574 1.6e-76 290.0 207 75.8
BolC8t51465H Brassica oleracea HOM05D000759 ORTHO05D000574 1.6e-76 290.0 207 75.8
Thhalv10000020m.g Eutrema salsugineum HOM05D000759 ORTHO05D000574 2.1e-73 279.6 215 71.6
Aa31sc83G80 Aethionema arabicum HOM05D000759 ORTHO05D000574 9.3e-69 264.2 210 68.6
THA.LOC104803613 Tarenaya hassleriana HOM05D000759 ORTHO05D000574 1.0e-59 234.2 198 67.7
Cpa.g.sc127.30 Carica papaya HOM05D000759 ORTHO05D000574 3.0e-35 152.9 250 41.6
GSVIVG01035957001 Vitis vinifera HOM05D000759 ORTHO05D000574 1.7e-33 147.1 209 45.5
Atru.chr7.2543 Acer truncatum HOM05D000759 ORTHO05D000574 9.1e-32 141.4 232 43.1
Cfa013063 Carpinus fangiana HOM05D000759 ORTHO05D000574 3.2e-29 132.9 217 41.9
MELO3C016965.2 Cucumis melo HOM05D000759 ORTHO05D000574 2.3e-27 126.7 204 41.7
CsaV3_4G036600 Cucumis sativus L. HOM05D000759 ORTHO05D000574 5.1e-27 125.6 204 43.1
Ciclev10007257m.g Citrus clementina HOM05D000759 ORTHO05D000574 1.7e-25 120.6 220 40.9
ClCG05G016340 Citrullus lanatus HOM05D000759 ORTHO05D000574 2.8e-25 119.8 205 42.4
CSS0048297 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 4.8e-25 119.0 213 41.3
Lj7A733G45 Lonicera japonica HOM05D000759 ORTHO05D000574 4.8e-25 119.0 218 39.0
Haze_21423 Corylus avellana HOM05D000759 ORTHO05D000574 3.1e-24 116.3 268 34.7
QL02p018982 Quercus lobata HOM05D000759 ORTHO05D000574 1.5e-23 114.0 265 34.3
Dinv40975 Davidia involucrata HOM05D000759 ORTHO05D000574 3.4e-23 112.8 225 40.9
Sabra06G0206200 Salix brachista HOM05D000759 ORTHO05D000574 2.9e-22 109.8 248 35.5
Prupe.1G393200 Prunus persica HOM05D000759 ORTHO05D000574 2.7e-20 103.2 256 34.0
EL10Ac2g04115 Beta vulgaris HOM05D000759 ORTHO05D000574 1.0e-19 101.3 273 32.2
Sed0026649 Sechium edule HOM05D000759 ORTHO05D000574 2.3e-19 100.1 241 36.5
DCAR_022856 Daucus carota HOM05D000759 ORTHO05D000574 6.7e-19 98.6 202 36.6
Potri.006G263700 Populus trichocarpa HOM05D000759 ORTHO05D000574 1.1e-18 97.8 277 31.8
Ah.16g105040 Amaranthus hybridus HOM05D000759 ORTHO05D000574 3.3e-18 96.3 256 32.4
CiPaw.07G229700 Carya illinoinensis HOM05D000759 ORTHO05D000574 1.7e-17 94.0 240 32.1
Sabra18G0022000 Salix brachista HOM05D000759 ORTHO05D000574 1.7e-17 94.0 290 29.3
AUR62012479 Chenopodium quinoa HOM05D000759 ORTHO05D000574 3.7e-17 92.8 283 32.2
AUR62031605 Chenopodium quinoa HOM05D000759 ORTHO05D000574 1.4e-16 90.9 284 29.2
Aqoxy2G00599 Aquilegia oxysepala HOM05D000759 ORTHO05D000574 1.8e-16 90.5 277 30.0
Potri.018G019600 Populus trichocarpa HOM05D000759 ORTHO05D000574 3.1e-16 89.7 241 29.9
Sed0004730 Sechium edule HOM05D000759 ORTHO05D000574 4.1e-16 89.4 229 34.1
PSO384G1069 Papaver somniferum HOM05D000759 ORTHO05D000574 5.3e-16 89.0 179 36.9
Sc09g0010610 Simmondsia chinensis HOM05D000759 ORTHO05D000574 7.0e-16 88.6 260 29.2
Oeu032508.2 Olea europaea HOM05D000759 ORTHO05D000574 9.1e-16 88.2 259 31.7
Rhsim02G0213600 Rhododendron simsii HOM05D000759 ORTHO05D000574 9.1e-16 88.2 261 32.6
Manes.16G129100 Manihot esculenta HOM05D000759 ORTHO05D000574 1.6e-15 87.4 201 35.3
ATR0739G179 Amborella trichopoda HOM05D000759 ORTHO05D000574 5.9e-15 85.5 199 32.7
FAN27G1460 Fragaria x ananassa HOM05D000759 ORTHO05D000574 5.9e-15 85.5 260 30.4
Manes.03G009100 Manihot esculenta HOM05D000759 ORTHO05D000574 1.3e-14 84.3 204 36.8
Eucgr.C01939 Eucalyptus grandis HOM05D000759 ORTHO05D000574 1.7e-14 84.0 245 29.4
Actinidia10517 Actinidia chinensis HOM05D000759 ORTHO05D000574 2.9e-14 83.2 270 31.5
MSTRG.11766 Avicennia marina HOM05D000759 ORTHO05D000574 3.8e-14 82.8 276 27.2
Nn8g39868 Nelumbo nucifera HOM05D000759 ORTHO05D000574 5.0e-14 82.4 226 33.6
Thecc.09G016300 Theobroma cacao HOM05D000759 ORTHO05D000574 8.5e-14 81.6 309 27.5
FvH4_2g41080 Fragaria vesca HOM05D000759 ORTHO05D000574 2.5e-13 80.1 260 29.2
RcHm_v2.0_Chr6g0299461 Rosa chinensis HOM05D000759 ORTHO05D000574 3.2e-13 79.7 277 27.8
HPP92_021961 Vanilla planifolia HOM05D000759 ORTHO05D000574 5.5e-13 79.0 228 32.0
CAN.G1424.12 Capsicum annuum HOM05D000759 ORTHO05D000574 1.6e-12 77.4 107 44.9
CiPaw.08G006300 Carya illinoinensis HOM05D000759 ORTHO05D000574 4.7e-12 75.9 186 32.3
COL.COLO4_18945 Corchorus olitorius HOM05D000759 ORTHO05D000574 2.3e-11 73.6 130 39.2
TPR.G38847 Trifolium pratense HOM05D000759 ORTHO05D000574 5.2e-11 72.4 59 64.4
Nitab4.5_0005188g0060 Nicotiana tabacum HOM05D000759 ORTHO05D000574 1.2e-10 71.2 168 35.1
Solyc07g005500.2 Solanum lycopersicum HOM05D000759 ORTHO05D000574 1.5e-10 70.9 168 36.3
CsaV3_1G028880 Cucumis sativus L. HOM05D000759 ORTHO05D000574 2.0e-10 70.5 117 40.2
Sopen07g001600 Solanum pennellii HOM05D000759 ORTHO05D000574 2.6e-10 70.1 104 45.2
vmacro11246 Vaccinium macrocarpon HOM05D000759 ORTHO05D000574 2.6e-10 70.1 244 29.1
MELO3C010231.2 Cucumis melo HOM05D000759 ORTHO05D000574 4.4e-10 69.3 218 33.0
CsaV3_1G024320 Cucumis sativus L. HOM05D000759 ORTHO05D000574 5.7e-10 68.9 117 39.3
FvH4_1g01040 Fragaria vesca HOM05D000759 ORTHO05D000574 9.7e-10 68.2 55 58.2
Haze_19219 Corylus avellana HOM05D000759 ORTHO05D000574 1.3e-09 67.8 197 33.0
DCAR_014813 Daucus carota HOM05D000759 ORTHO05D000574 2.8e-09 66.6 73 49.3
Ca_13071_v3 Cicer arietinum L. HOM05D000759 ORTHO05D000574 3.7e-09 66.2 100 44.0
MD15G1153000 Malus domestica HOM05D000759 ORTHO05D000574 3.7e-09 66.2 110 40.9
Hund19564 Selenicereus undatus HOM05D000759 ORTHO05D000574 3.7e-09 66.2 294 27.9
CSS0040913 Camellia sinensis var. sinensis HOM05D000759 ORTHO05D000574 4.8e-09 65.9 60 56.7
GSVIVG01003875001 Vitis vinifera HOM05D000759 ORTHO05D000574 4.8e-09 65.9 217 31.8
Zm00001eb176750 Zea mays HOM05D000759 ORTHO05D000574 4.8e-09 65.9 264 28.8
Cfa020836 Carpinus fangiana HOM05D000759 ORTHO05D000574 6.3e-09 65.5 213 31.0
Duzib168G0448 Durio zibethinus HOM05D000759 ORTHO05D000574 6.3e-09 65.5 79 49.4
Lsat_1_v5_gn_5_91720 Lactuca sativa HOM05D000759 ORTHO05D000574 6.3e-09 65.5 158 35.4
Psat6g026760 Pisum sativum HOM05D000759 ORTHO05D000574 8.2e-09 65.1 180 35.0
Cc06_g15130 Coffea canephora HOM05D000759 ORTHO05D000574 1.1e-08 64.7 83 44.6
Duzib150G0452 Durio zibethinus HOM05D000759 ORTHO05D000574 1.1e-08 64.7 226 31.9
Lj5g0015952 Lotus japonicus HOM05D000759 ORTHO05D000574 1.1e-08 64.7 91 40.7
RcHm_v2.0_Chr2g0085801 Rosa chinensis HOM05D000759 ORTHO05D000574 1.1e-08 64.7 162 30.9
TPR.G38874 Trifolium pratense HOM05D000759 ORTHO05D000574 1.1e-08 64.7 75 53.3
ClCG06G012330 Citrullus lanatus HOM05D000759 ORTHO05D000574 1.4e-08 64.3 119 38.7
MD00G1143700 Malus domestica HOM05D000759 ORTHO05D000574 1.4e-08 64.3 345 24.9
Medtr4g131020 Medicago truncatula HOM05D000759 ORTHO05D000574 2.4e-08 63.5 96 35.4
Nitab4.5_0007899g0040 Nicotiana tabacum HOM05D000759 ORTHO05D000574 4.1e-08 62.8 227 27.8
Lalb_Chr14g0361781 Lupinus albus HOM05D000759 ORTHO05D000574 5.3e-08 62.4 165 36.4
FAN20G2966 Fragaria x ananassa HOM05D000759 ORTHO05D000574 1.2e-07 61.2 86 43.0
Gohir.A06G097000 Gossypium hirsutum HOM05D000759 ORTHO05D000574 1.2e-07 61.2 230 30.4
Atru.chr7.105 Acer truncatum HOM05D000759 ORTHO05D000574 1.6e-07 60.8 211 29.4
Eucgr.C02574 Eucalyptus grandis HOM05D000759 ORTHO05D000574 1.6e-07 60.8 184 28.3
Glyma.14G102800 Glycine max HOM05D000759 ORTHO05D000574 1.6e-07 60.8 108 43.5
Medtr1g013800 Medicago truncatula HOM05D000759 ORTHO05D000574 1.6e-07 60.8 167 34.7
Pp3c4_16430 Physcomitrium patens HOM05D000759 ORTHO05D000574 1.6e-07 60.8 62 51.6
CiPaw.16G113800 Carya illinoinensis HOM05D000759 ORTHO05D000574 2.0e-07 60.5 237 29.1
Ciclev10027690m.g Citrus clementina HOM05D000759 ORTHO05D000574 2.0e-07 60.5 213 29.6
Gohir.D06G097600 Gossypium hirsutum HOM05D000759 ORTHO05D000574 2.0e-07 60.5 234 29.9
CiPaw.15G175500 Carya illinoinensis HOM05D000759 ORTHO05D000574 2.7e-07 60.1 200 32.0
FAN23G2264 Fragaria x ananassa HOM05D000759 ORTHO05D000574 2.7e-07 60.1 181 31.5
Gorai.010G112600 Gossypium raimondii HOM05D000759 ORTHO05D000574 2.7e-07 60.1 222 29.3
Lj4g0013729 Lotus japonicus HOM05D000759 ORTHO05D000574 2.7e-07 60.1 50 52.0
MD15G1039700 Malus domestica HOM05D000759 ORTHO05D000574 2.7e-07 60.1 94 45.7
Phvul.001G042000 Phaseolus vulgaris HOM05D000759 ORTHO05D000574 2.7e-07 60.1 52 59.6
Cpa.g.sc46.143 Carica papaya HOM05D000759 ORTHO05D000574 3.5e-07 59.7 186 30.6
FAN19G2320 Fragaria x ananassa HOM05D000759 ORTHO05D000574 3.5e-07 59.7 52 53.8
FAN26G2076 Fragaria x ananassa HOM05D000759 ORTHO05D000574 3.5e-07 59.7 52 53.8
FAN28G0669 Fragaria x ananassa HOM05D000759 ORTHO05D000574 3.5e-07 59.7 52 53.8
Prupe.7G261700 Prunus persica HOM05D000759 ORTHO05D000574 3.5e-07 59.7 179 31.3
COL.COLO4_18795 Corchorus olitorius HOM05D000759 ORTHO05D000574 4.5e-07 59.3 73 43.8
Migut.J01433 Erythranthe guttata HOM05D000759 ORTHO05D000574 4.5e-07 59.3 47 59.6
Lalb_Chr24g0402011 Lupinus albus HOM05D000759 ORTHO05D000574 4.5e-07 59.3 115 40.9
Peaxi162Scf00062g00313 Petunia axillaris HOM05D000759 ORTHO05D000574 4.5e-07 59.3 72 47.2
Peaxi162Scf00252g00118 Petunia axillaris HOM05D000759 ORTHO05D000574 4.5e-07 59.3 211 29.4
Potri.006G185501 Populus trichocarpa HOM05D000759 ORTHO05D000574 4.5e-07 59.3 108 38.0
ATR0661G579 Amborella trichopoda HOM05D000759 ORTHO05D000574 5.9e-07 58.9 152 33.6
arahy.Tifrunner.gnm1.ann1.AWZ40H Arachis hypogaea HOM05D000759 ORTHO05D000574 5.9e-07 58.9 204 27.9
TPR.G39181 Trifolium pratense HOM05D000759 ORTHO05D000574 5.9e-07 58.9 239 26.8
VMungo1215G3255 Vigna mungo HOM05D000759 ORTHO05D000574 5.9e-07 58.9 167 31.7
arahy.Tifrunner.gnm1.ann1.C850Y8 Arachis hypogaea HOM05D000759 ORTHO05D000574 7.7e-07 58.5 117 41.9
Rhsim01G0035100 Rhododendron simsii HOM05D000759 ORTHO05D000574 7.7e-07 58.5 211 31.3
Sed0007572 Sechium edule HOM05D000759 ORTHO05D000574 7.7e-07 58.5 234 28.2
arahy.Tifrunner.gnm1.ann1.IBG53V Arachis hypogaea HOM05D000759 ORTHO05D000574 1.0e-06 58.2 117 41.9
Gorai.009G062500 Gossypium raimondii HOM05D000759 ORTHO05D000574 1.0e-06 58.2 286 25.9
VMungo0647G1405 Vigna mungo HOM05D000759 ORTHO05D000574 1.0e-06 58.2 85 45.9
Glyma.17G074500 Glycine max HOM05D000759 ORTHO05D000574 1.3e-06 57.8 263 30.0
Gohir.A05G059300 Gossypium hirsutum HOM05D000759 ORTHO05D000574 1.3e-06 57.8 298 25.8
Gohir.D05G061432 Gossypium hirsutum HOM05D000759 ORTHO05D000574 1.3e-06 57.8 299 25.8
Manes.14G112656 Manihot esculenta HOM05D000759 ORTHO05D000574 1.3e-06 57.8 79 44.3
Psat4g009240 Pisum sativum HOM05D000759 ORTHO05D000574 1.3e-06 57.8 218 27.1
Sopen12g004990 Solanum pennellii HOM05D000759 ORTHO05D000574 1.3e-06 57.8 103 34.0
Potri.018G108000 Populus trichocarpa HOM05D000759 ORTHO05D000574 1.7e-06 57.4 165 33.3
Lalb_Chr13g0300901 Lupinus albus HOM05D000759 ORTHO05D000574 2.2e-06 57.0 58 48.3
Oeu021277.1 Olea europaea HOM05D000759 ORTHO05D000574 2.2e-06 57.0 88 38.6
TWI34G0901 Tripterygium wilfordii HOM05D000759 ORTHO05D000574 2.2e-06 57.0 61 49.2
Gohir.D13G190601 Gossypium hirsutum HOM05D000759 ORTHO05D000574 5.0e-06 55.8 243 30.0
Gorai.013G216500 Gossypium raimondii HOM05D000759 ORTHO05D000574 5.0e-06 55.8 243 30.0
Phvul.003G156700 Phaseolus vulgaris HOM05D000759 ORTHO05D000574 5.0e-06 55.8 232 28.9
Pp3c12_4420 Physcomitrium patens HOM05D000759 ORTHO05D000574 6.5e-06 55.5 62 46.8
TWI63G0896 Tripterygium wilfordii HOM05D000759 ORTHO05D000574 6.5e-06 55.5 155 31.0
ECA234G3418 Erigeron canadensis HOM05D000759 ORTHO05D000574 8.5e-06 55.1 51 45.1
HanXRQChr06g0181991 Helianthus annuus HOM05D000759 ORTHO05D000574 8.5e-06 55.1 79 38.0
Hma1.2p1_0028F.1_g017480 Hydrangea macrophylla HOM05D000759 ORTHO05D000574 8.5e-06 55.1 103 39.8
Thecc.09G031900 Theobroma cacao HOM05D000759 ORTHO05D000574 8.5e-06 55.1 217 30.4


User provided reference genes

Program Settings