Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G30430 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 5.4e-62 240.7 115 100.0
AT2G35280 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 1.5e-56 222.6 114 93.9
CARHR101890 Cardamine hirsuta HOM05D008292 ORTHO05D003352 7.1e-38 160.6 113 69.0
AT1G14800 Arabidopsis thaliana HOM05D000313 ORTHO05D000065 1.2e-32 143.3 67 98.5
AT5G17167 Arabidopsis thaliana HOM05D003839 ORTHO05D003352 2.0e-32 142.5 70 94.3
AT1G36030 Arabidopsis thaliana HOM05D008292 ORTHO05D003352 3.2e-22 108.6 68 79.4
A01p17040 Brassica napus HOM05D008292 ORTHO05D003352 6.1e-21 104.4 113 43.4
BraA09t39508Z Brassica rapa HOM05D008292 ORTHO05D003352 6.1e-21 104.4 113 43.4
BcaC03g15888 Brassica carinata HOM05D008292 ORTHO05D003352 2.3e-20 102.4 113 40.7
AL6G38540 Arabidopsis lyrata HOM05D008292 ORTHO05D003352 2.5e-19 99.0 67 74.6
BcaC02g11488 Brassica carinata HOM05D008292 ORTHO05D003352 9.7e-19 97.1 113 38.9
C04p14850 Brassica napus HOM05D008292 ORTHO05D003352 9.7e-19 97.1 113 38.9
BcaB04g16904 Brassica carinata HOM05D008292 ORTHO05D003352 3.7e-18 95.1 113 38.9
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 3.7e-18 95.1 113 38.9
BolC3t15567H Brassica oleracea HOM05D008292 ORTHO05D003352 6.3e-18 94.4 113 40.7
A05p32880 Brassica napus HOM05D008292 ORTHO05D003352 1.4e-17 93.2 113 38.9
BraA05t22695Z Brassica rapa HOM05D008292 ORTHO05D003352 1.4e-17 93.2 113 38.9
BcaC03g15793 Brassica carinata HOM05D008292 ORTHO05D003352 1.8e-17 92.8 113 38.9
C03p32250 Brassica napus HOM05D008292 ORTHO05D003352 1.8e-17 92.8 113 40.7
BolC4t27064H Brassica oleracea HOM05D008292 ORTHO05D003352 1.8e-17 92.8 113 38.9
BolC6t39088H Brassica oleracea HOM05D008292 ORTHO05D003352 1.8e-17 92.8 113 40.7
C03p19740 Brassica napus HOM05D008292 ORTHO05D003352 3.1e-17 92.0 111 39.6
BcaB01g00999 Brassica carinata HOM05D008292 ORTHO05D003352 5.3e-17 91.3 100 41.0
C07p08430 Brassica napus HOM05D008292 ORTHO05D003352 5.3e-17 91.3 113 39.8
BolC2t12326H Brassica oleracea HOM05D008292 ORTHO05D003352 9.0e-17 90.5 113 38.9
BraA08t34531Z Brassica rapa HOM05D008292 ORTHO05D003352 9.0e-17 90.5 113 37.2
BcaC03g17703 Brassica carinata HOM05D008292 ORTHO05D003352 1.5e-16 89.7 113 38.1
BolC2t11778H Brassica oleracea HOM05D008292 ORTHO05D003352 1.5e-16 89.7 113 38.1
Thhalv10005441m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.5e-16 89.7 108 42.6
Thhalv10002269m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 3.4e-16 88.6 110 40.0
AL8G28420 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 4.5e-16 88.2 105 40.0
C09p33270 Brassica napus HOM05D008292 ORTHO05D003352 5.9e-16 87.8 100 41.0
BolC9t56163H Brassica oleracea HOM05D008292 ORTHO05D003352 5.9e-16 87.8 100 41.0
BcaNung02469 Brassica carinata HOM05D003839 ORTHO05D003352 1.0e-15 87.0 103 39.8
C07p40670 Brassica napus HOM05D003839 ORTHO05D003352 1.0e-15 87.0 103 39.8
BcaB02g06630 Brassica carinata HOM05D003839 ORTHO05D003352 1.7e-15 86.3 104 43.3
C03p73890 Brassica napus HOM05D008292 ORTHO05D003352 6.5e-15 84.3 91 46.2
BcaC07g37399 Brassica carinata HOM05D008292 ORTHO05D003352 8.5e-15 84.0 103 39.8
BcaNung06308 Brassica carinata HOM05D008292 ORTHO05D003352 8.5e-15 84.0 100 42.0
C05p31020 Brassica napus HOM05D008292 ORTHO05D003352 1.1e-14 83.6 91 41.8
BolC5t31825H Brassica oleracea HOM05D008292 ORTHO05D003352 1.1e-14 83.6 91 42.9
Thhalv10002917m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.4e-14 83.2 104 42.3
A06p31440 Brassica napus HOM05D008292 ORTHO05D003352 3.2e-14 82.0 103 39.8
BcaB05g24307 Brassica carinata HOM05D003839 ORTHO05D003352 1.6e-13 79.7 105 41.0
BcaC06g36055 Brassica carinata HOM05D008292 ORTHO05D003352 2.1e-13 79.3 100 41.0
A05p03580 Brassica napus HOM05D003839 ORTHO05D003352 7.9e-13 77.4 104 38.5
BraA09t37976Z Brassica rapa HOM05D008292 ORTHO05D003352 7.9e-13 77.4 104 38.5
BcaC09g47930 Brassica carinata HOM05D008292 ORTHO05D003352 1.4e-12 76.6 81 43.2
Thhalv10005434m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 1.4e-12 76.6 107 37.4
BolC4t27974H Brassica oleracea HOM05D003839 ORTHO05D003352 1.8e-12 76.3 114 39.5
A09p40840 Brassica napus HOM05D008292 ORTHO05D003352 3.0e-12 75.5 92 40.2
BraA02t07568Z Brassica rapa HOM05D008292 ORTHO05D003352 1.5e-11 73.2 100 38.0
BcaC05g27196 Brassica carinata HOM05D008292 ORTHO05D003352 2.0e-11 72.8 78 44.9
A01p36380 Brassica napus HOM05D003839 ORTHO05D003352 2.5e-11 72.4 103 35.9
BcaB05g23849 Brassica carinata HOM05D008292 ORTHO05D003352 4.3e-11 71.6 113 33.6
BolC6t35914H Brassica oleracea HOM05D003839 ORTHO05D003352 4.3e-11 71.6 107 39.3
BolC7t41257H Brassica oleracea HOM05D008292 ORTHO05D003352 5.7e-11 71.2 91 38.5
BcaC02g08358 Brassica carinata HOM05D008292 ORTHO05D003352 2.8e-10 68.9 113 32.7
BcaB02g06629 Brassica carinata HOM05D003839 ORTHO05D003352 1.4e-09 66.6 100 39.0
BcaC04g22280 Brassica carinata HOM05D003839 ORTHO05D003352 1.4e-09 66.6 114 33.3
A09p20270 Brassica napus HOM05D003839 ORTHO05D003352 5.3e-09 64.7 108 32.4
BraA03t14449Z Brassica rapa HOM05D000313 ORTHO05D000065 5.3e-09 64.7 111 32.4
C04p33340 Brassica napus HOM05D003839 ORTHO05D003352 9.1e-09 63.9 105 34.3
C06p50270 Brassica napus HOM05D003839 ORTHO05D003352 9.1e-09 63.9 105 34.3
BolC5t32063H Brassica oleracea HOM05D000313 ORTHO05D000065 9.1e-09 63.9 111 32.4
BraA07t28801Z Brassica rapa HOM05D003839 ORTHO05D003352 9.1e-09 63.9 108 31.5
C05p33380 Brassica napus HOM05D000313 ORTHO05D000065 1.2e-08 63.5 94 34.0
A03p53820 Brassica napus HOM05D000943 ORTHO05D002475 1.5e-08 63.2 94 31.9
BcaC07g37053 Brassica carinata HOM05D008292 ORTHO05D003352 3.4e-08 62.0 68 42.6
BcaC05g25843 Brassica carinata HOM05D003839 ORTHO05D003352 7.7e-08 60.8 106 31.1
BcaC07g40693 Brassica carinata HOM05D008292 ORTHO05D003352 1.0e-07 60.5 61 47.5
C08p36920 Brassica napus HOM05D008292 ORTHO05D003352 1.0e-07 60.5 61 47.5
BolC9t55033H Brassica oleracea HOM05D003839 ORTHO05D003352 1.7e-07 59.7 121 31.4
C09p21410 Brassica napus HOM05D003839 ORTHO05D003352 2.9e-07 58.9 101 31.7
BcaB08g35221 Brassica carinata HOM05D003839 ORTHO05D003352 5.0e-07 58.2 106 32.1
DCAR_016182 Daucus carota HOM05D002915 ORTHO05D003004 5.0e-07 58.2 106 31.1
Thhalv10027513m.g Eutrema salsugineum HOM05D003839 ORTHO05D003352 5.0e-07 58.2 87 37.9
Gohir.A05G169100 Gossypium hirsutum HOM05D002915 ORTHO05D003004 5.0e-07 58.2 100 33.0
Gohir.D05G172300 Gossypium hirsutum HOM05D002915 ORTHO05D003004 5.0e-07 58.2 107 32.7
TPR.G3196 Trifolium pratense HOM05D002915 ORTHO05D003004 5.0e-07 58.2 113 30.1
Gorai.009G177500 Gossypium raimondii HOM05D002915 ORTHO05D003004 8.5e-07 57.4 107 32.7
CSS0045033 Camellia sinensis var. sinensis HOM05D002915 ORTHO05D003004 2.5e-06 55.8 105 28.6
TAR629G0865 Trochodendron aralioides HOM05D002915 ORTHO05D003004 2.5e-06 55.8 108 28.7
Ciclev10006753m.g Citrus clementina HOM05D002915 ORTHO05D003004 4.2e-06 55.1 96 30.2
AL4G17890 Arabidopsis lyrata HOM05D003839 ORTHO05D003352 5.5e-06 54.7 85 35.3
BcaB07g31374 Brassica carinata HOM05D003839 ORTHO05D003352 5.5e-06 54.7 111 34.2
DCAR_018111 Daucus carota HOM05D002915 ORTHO05D003004 5.5e-06 54.7 89 32.6
Thhalv10019573m.g Eutrema salsugineum HOM05D002915 ORTHO05D003004 5.5e-06 54.7 104 35.6
TPR.G19430 Trifolium pratense HOM05D002915 ORTHO05D003004 7.2e-06 54.3 113 32.7
Lj6A821T72 Lonicera japonica HOM05D002915 ORTHO05D003004 9.4e-06 53.9 97 26.8
Rhsim12G0105300 Rhododendron simsii HOM05D002915 ORTHO05D003004 9.4e-06 53.9 98 27.6


User provided reference genes

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