Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G29740 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 1.2e-37 159.5 88 100.0
Carub.0005s0831 Capsella rubella HOM05D002006 ORTHO05D002128 2.7e-29 131.7 87 82.8
AL4G38280 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 4.8e-26 120.9 87 73.6
Thhalv10017581m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 7.9e-21 103.6 87 62.1
BcaC01g05401 Brassica carinata HOM05D002006 ORTHO05D002128 3.9e-20 101.3 87 62.1
Sp4g22790 Schrenkiella parvula HOM05D002006 ORTHO05D002128 1.5e-19 99.4 88 62.5
AL4G38290 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 2.5e-19 98.6 88 63.6
AT2G40450 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 3.3e-19 98.2 88 63.6
C03p26960 Brassica napus HOM05D002006 ORTHO05D002128 3.3e-19 98.2 87 60.9
BolC3t15078H Brassica oleracea HOM05D002006 ORTHO05D002128 4.3e-19 97.8 87 60.9
C03p26970 Brassica napus HOM05D002006 ORTHO05D002128 5.7e-19 97.4 88 61.4
BolC3t15079H Brassica oleracea HOM05D002006 ORTHO05D002128 5.7e-19 97.4 88 61.4
BcaB02g07843 Brassica carinata HOM05D002006 ORTHO05D002128 7.4e-19 97.1 88 60.2
CARHR135560 Cardamine hirsuta HOM05D002006 ORTHO05D002128 1.6e-18 95.9 82 62.2
BcaB06g28404 Brassica carinata HOM05D002006 ORTHO05D002128 2.2e-18 95.5 87 62.1
BraA03t11497Z Brassica rapa HOM05D002006 ORTHO05D002128 2.8e-18 95.1 87 58.6
Sp1g34650 Schrenkiella parvula HOM05D002006 ORTHO05D002128 2.8e-18 95.1 87 59.8
BolC3t15080H Brassica oleracea HOM05D002006 ORTHO05D002128 3.7e-18 94.7 87 56.3
Thhalv10029325m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 8.2e-18 93.6 87 59.8
Carub.0004s2270 Capsella rubella HOM05D002006 ORTHO05D002128 1.1e-17 93.2 88 60.2
Sp7g13200 Schrenkiella parvula HOM05D002006 ORTHO05D002128 1.1e-17 93.2 88 56.8
BcaB06g28475 Brassica carinata HOM05D002006 ORTHO05D002128 3.1e-17 91.7 87 60.9
C04p60230 Brassica napus HOM05D002006 ORTHO05D002128 3.1e-17 91.7 87 60.9
BolC4t27524H Brassica oleracea HOM05D002006 ORTHO05D002128 3.1e-17 91.7 87 60.9
C03p26980 Brassica napus HOM05D002006 ORTHO05D002128 4.1e-17 91.3 87 55.2
C04p60210 Brassica napus HOM05D002006 ORTHO05D002128 4.1e-17 91.3 87 60.9
BolC4t21846H Brassica oleracea HOM05D002006 ORTHO05D002128 4.1e-17 91.3 87 58.6
BolC4t27522H Brassica oleracea HOM05D002006 ORTHO05D002128 4.1e-17 91.3 87 60.9
AT5G48510 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 5.3e-17 90.9 88 60.2
Thhalv10029229m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 5.3e-17 90.9 87 60.9
AL6G47800 Arabidopsis lyrata HOM05D000070 ORTHO05D005950 6.9e-17 90.5 87 57.5
BraA04t17900Z Brassica rapa HOM05D002006 ORTHO05D002128 9.0e-17 90.1 87 59.8
Carub.0008s0809 Capsella rubella HOM05D002006 ORTHO05D002128 9.0e-17 90.1 88 60.2
CARHR253390 Cardamine hirsuta HOM05D002006 ORTHO05D002128 9.0e-17 90.1 87 60.9
A03p22740 Brassica napus HOM05D002006 ORTHO05D002128 1.2e-16 89.7 87 56.3
A05p16920 Brassica napus HOM05D002006 ORTHO05D002128 1.5e-16 89.4 88 54.5
BraA05t19167Z Brassica rapa HOM05D002006 ORTHO05D002128 1.5e-16 89.4 87 57.5
BcaB01g03541 Brassica carinata HOM05D002006 ORTHO05D002128 2.0e-16 89.0 87 55.2
A03p22730 Brassica napus HOM05D002006 ORTHO05D002128 2.0e-16 89.0 84 58.3
BraA04t17903Z Brassica rapa HOM05D002006 ORTHO05D002128 2.0e-16 89.0 87 59.8
Aa31sc126G20 Aethionema arabicum HOM05D002006 ORTHO05D002128 2.6e-16 88.6 88 60.2
C04p01960 Brassica napus HOM05D002006 ORTHO05D002128 2.6e-16 88.6 87 57.5
A04p23770 Brassica napus HOM05D002006 ORTHO05D002128 3.4e-16 88.2 87 59.8
AL4G16550 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 4.5e-16 87.8 88 60.2
Thhalv10012008m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 4.5e-16 87.8 96 54.2
BraA03t11498Z Brassica rapa HOM05D002006 ORTHO05D002128 5.9e-16 87.4 87 55.2
CARHR253260 Cardamine hirsuta HOM05D002006 ORTHO05D002128 5.9e-16 87.4 87 58.6
BraA04t17902Z Brassica rapa HOM05D002006 ORTHO05D002128 7.7e-16 87.0 87 58.6
AL8G21400 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 1.3e-15 86.3 88 56.8
Thhalv10017253m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.7e-15 85.9 87 55.2
Sp6g04670 Schrenkiella parvula HOM05D002006 ORTHO05D002128 2.2e-15 85.5 87 55.2
AL4G16510 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 3.8e-15 84.7 88 55.7
Aa31LG5G19100 Aethionema arabicum HOM05D002006 ORTHO05D002128 1.1e-14 83.2 82 58.5
A03p66000 Brassica napus HOM05D002006 ORTHO05D002128 1.4e-14 82.8 87 58.6
BraA03t15654Z Brassica rapa HOM05D002006 ORTHO05D002128 1.4e-14 82.8 87 58.6
Aa31sc351G30 Aethionema arabicum HOM05D002006 ORTHO05D002128 1.9e-14 82.4 88 56.8
A05p01700 Brassica napus HOM05D002006 ORTHO05D002128 1.9e-14 82.4 87 56.3
THA.LOC104812138 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 2.5e-14 82.0 88 55.7
AT4G04090 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 7.2e-14 80.5 87 55.2
BcaC02g12715 Brassica carinata HOM05D002006 ORTHO05D002128 9.4e-14 80.1 87 51.7
Thhalv10017692m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.2e-13 79.7 82 54.9
A07p22840 Brassica napus HOM05D002006 ORTHO05D024234 1.0e-12 76.6 87 49.4
BraA07t29949Z Brassica rapa HOM05D002006 ORTHO05D024234 1.0e-12 76.6 87 49.4
Aa31LG5G19080 Aethionema arabicum HOM05D002006 ORTHO05D002128 1.4e-12 76.3 82 51.2
THA.LOC104824348 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.4e-12 76.3 87 50.6
BcaC08g44768 Brassica carinata HOM05D002006 ORTHO05D002128 2.3e-12 75.5 87 48.3
Aa31sc236G40 Aethionema arabicum HOM05D002006 ORTHO05D002128 1.5e-11 72.8 82 50.0
Carub.0004s0484 Capsella rubella HOM05D002006 ORTHO05D002128 2.5e-11 72.0 88 50.0
BcaB06g28480 Brassica carinata HOM05D002006 ORTHO05D021918 3.3e-11 71.6 65 60.0
C04p60280 Brassica napus HOM05D002006 ORTHO05D021918 3.3e-11 71.6 65 60.0
BolC4t27527H Brassica oleracea HOM05D002006 ORTHO05D021918 3.3e-11 71.6 65 60.0
Carub.0004s0485 Capsella rubella HOM05D002006 ORTHO05D002128 1.7e-10 69.3 81 51.9
AL8G21380 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 2.8e-10 68.6 88 50.0
THA.LOC104824594 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 2.8e-10 68.6 87 49.4
Carub.0004s0486 Capsella rubella HOM05D002006 ORTHO05D002128 8.2e-10 67.0 69 58.0
Thhalv10017538m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 8.2e-10 67.0 82 52.4
Thhalv10017771m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.4e-09 66.2 78 52.6
AL4G16530 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 2.4e-09 65.5 88 47.7
BraA09t38224Z Brassica rapa HOM05D002006 ORTHO05D002128 5.3e-09 64.3 77 53.2
C04p01980 Brassica napus HOM05D002006 ORTHO05D002128 6.9e-09 63.9 75 52.0
BolC4t21848H Brassica oleracea HOM05D002006 ORTHO05D002128 6.9e-09 63.9 75 52.0
Thhalv10011969m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 9.1e-09 63.5 64 59.4
BcaB06g28405 Brassica carinata HOM05D002006 ORTHO05D021918 1.2e-08 63.2 126 38.1
A05p01710 Brassica napus HOM05D002006 ORTHO05D002128 1.2e-08 63.2 75 50.7
BcaC02g12714 Brassica carinata HOM05D002006 ORTHO05D002128 4.5e-08 61.2 72 58.3
Carub.0001s0058 Capsella rubella HOM05D002006 ORTHO05D002128 4.5e-08 61.2 87 43.7
Thhalv10017873m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 4.5e-08 61.2 87 43.7
DCAR_028544 Daucus carota HOM05D002006 ORTHO05D002128 5.9e-08 60.8 83 44.6
Sp1g00680 Schrenkiella parvula HOM05D002006 ORTHO05D002128 5.9e-08 60.8 81 46.9
BraA04t17904Z Brassica rapa HOM05D002006 ORTHO05D021918 7.7e-08 60.5 58 58.6
BraA05t19168Z Brassica rapa HOM05D002006 ORTHO05D002128 1.0e-07 60.1 75 50.7
Thhalv10017762m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 1.0e-07 60.1 68 52.9
Manes.10G006400 Manihot esculenta HOM05D002006 ORTHO05D002128 1.0e-07 60.1 78 44.9
Medtr3g072160 Medicago truncatula HOM05D002006 ORTHO05D002128 1.0e-07 60.1 78 44.9
PSO339G2463 Papaver somniferum HOM05D002006 ORTHO05D002128 1.3e-07 59.7 78 43.6
Dinv10556 Davidia involucrata HOM05D002006 ORTHO05D002128 1.7e-07 59.3 88 42.0
Psat5g132760 Pisum sativum HOM05D002006 ORTHO05D002128 1.7e-07 59.3 78 44.9
Thhalv10017737m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 2.2e-07 58.9 82 47.6
TPR.G31619 Trifolium pratense HOM05D002006 ORTHO05D002128 2.2e-07 58.9 78 44.9
Lj6g0006353 Lotus japonicus HOM05D002006 ORTHO05D002128 2.9e-07 58.5 88 40.9
Thhalv10017689m.g Eutrema salsugineum HOM05D002006 ORTHO05D002128 3.8e-07 58.2 88 44.3
PSO384G3750 Papaver somniferum HOM05D002006 ORTHO05D002128 3.8e-07 58.2 78 43.6
Potri.013G083800 Populus trichocarpa HOM05D002006 ORTHO05D002128 5.0e-07 57.8 86 41.9
Sabra13G0079300 Salix brachista HOM05D002006 ORTHO05D002128 5.0e-07 57.8 86 41.9
AT1G01640 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 1.4e-06 56.2 87 41.4
GSVIVG01032719001 Vitis vinifera HOM05D002006 ORTHO05D002128 1.4e-06 56.2 85 41.2
Aa31LG1G11000 Aethionema arabicum HOM05D002006 ORTHO05D002128 1.9e-06 55.8 87 40.2
arahy.Tifrunner.gnm1.ann1.5BTP04 Arachis hypogaea HOM05D002006 ORTHO05D002128 1.9e-06 55.8 78 42.3
arahy.Tifrunner.gnm1.ann1.IXTP9E Arachis hypogaea HOM05D002006 ORTHO05D002128 1.9e-06 55.8 78 42.3
ClCG11G005850 Citrullus lanatus HOM05D002006 ORTHO05D002128 1.9e-06 55.8 78 42.3
BcaB03g13601 Brassica carinata HOM05D002006 ORTHO05D002128 2.5e-06 55.5 86 40.7
Cpa.g.sc19.97 Carica papaya HOM05D002006 ORTHO05D002128 2.5e-06 55.5 85 41.2
CARHR000710 Cardamine hirsuta HOM05D002006 ORTHO05D002128 3.2e-06 55.1 87 41.4
Gohir.D04G014000 Gossypium hirsutum HOM05D002006 ORTHO05D002128 3.2e-06 55.1 79 46.8
Gorai.012G016500 Gossypium raimondii HOM05D002006 ORTHO05D002128 3.2e-06 55.1 79 46.8
Gorai.012G016600 Gossypium raimondii HOM05D002006 ORTHO05D002128 3.2e-06 55.1 79 45.6
QL08p064310 Quercus lobata HOM05D002006 ORTHO05D002128 4.2e-06 54.7 76 42.1
CARHR166380 Cardamine hirsuta HOM05D002006 ORTHO05D024234 5.5e-06 54.3 89 42.7
Duzib106G1806 Durio zibethinus HOM05D002006 ORTHO05D002128 5.5e-06 54.3 83 42.2
Gohir.A05G401600 Gossypium hirsutum HOM05D002006 ORTHO05D002128 5.5e-06 54.3 80 43.8
Aa31LG10G11140 Aethionema arabicum HOM05D002006 ORTHO05D002128 7.2e-06 53.9 84 41.7
CDE04G1602 Ceratophyllum demersum HOM05D002006 ORTHO05D002128 7.2e-06 53.9 81 39.5
CDE04G2521 Ceratophyllum demersum HOM05D002006 ORTHO05D002128 7.2e-06 53.9 81 39.5
Ciclev10032355m.g Citrus clementina HOM05D002006 ORTHO05D002128 7.2e-06 53.9 85 36.5
Duzib114G0585 Durio zibethinus HOM05D002006 ORTHO05D002128 7.2e-06 53.9 79 45.6
Duzib128G1589 Durio zibethinus HOM05D002006 ORTHO05D002128 7.2e-06 53.9 88 39.8
Gohir.D04G014150 Gossypium hirsutum HOM05D002006 ORTHO05D002128 7.2e-06 53.9 79 44.3
Gorai.012G016300 Gossypium raimondii HOM05D002006 ORTHO05D002128 7.2e-06 53.9 83 43.4
SGA_v2.0_scaffold60G20931 Striga asiatica HOM05D002006 ORTHO05D002128 7.2e-06 53.9 84 39.3
Gohir.A05G401700 Gossypium hirsutum HOM05D002006 ORTHO05D002128 9.4e-06 53.5 83 42.2
Gohir.D04G013900 Gossypium hirsutum HOM05D002006 ORTHO05D002128 9.4e-06 53.5 83 42.2
Gorai.012G016700 Gossypium raimondii HOM05D002006 ORTHO05D002128 9.4e-06 53.5 79 44.3
Lj1C964G6 Lonicera japonica HOM05D002006 ORTHO05D002128 9.4e-06 53.5 83 38.6
Thecc.10G172400 Theobroma cacao HOM05D002006 ORTHO05D002128 9.4e-06 53.5 79 44.3


User provided reference genes

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