Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 7.1e-254 880.2 461 100.0
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.2e-208 729.9 461 85.5
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 3.0e-204 715.3 461 84.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 2.7e-189 665.6 473 78.4
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.5e-187 659.8 464 79.1
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 9.4e-182 640.6 467 77.1
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 9.4e-182 640.6 467 77.1
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 1.2e-181 640.2 462 77.5
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.6e-181 639.8 485 73.8
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 2.3e-172 609.4 483 74.3
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 3.0e-172 609.0 483 74.1
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 3.0e-172 609.0 483 74.1
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.8e-156 556.6 491 66.4
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.7e-128 463.0 499 56.1
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 6.0e-128 461.8 502 56.2
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.0e-127 461.1 512 57.8
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.7e-127 460.3 512 57.0
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 3.0e-127 459.5 487 57.7
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 2.8e-125 453.0 492 54.9
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 2.4e-124 449.9 493 55.2
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 2.4e-124 449.9 487 54.4
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 8.9e-124 448.0 512 56.8
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.7e-122 443.7 485 54.8
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 2.2e-122 443.4 497 54.1
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 2.2e-122 443.4 491 54.6
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 1.9e-121 440.3 499 54.5
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.6e-120 437.2 490 54.7
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 2.3e-119 433.3 476 55.3
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.3e-119 433.3 487 55.4
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 6.6e-119 431.8 492 55.1
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 8.7e-119 431.4 484 54.3
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 2.5e-118 429.9 484 54.3
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.1e-117 426.8 485 54.0
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 3.6e-117 426.0 477 54.5
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.8e-116 423.7 489 54.4
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.3e-116 422.2 504 53.4
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 6.9e-116 421.8 465 55.9
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 7.6e-115 418.3 483 54.2
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.3e-114 417.5 495 53.9
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.9e-114 416.4 399 60.4
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.8e-114 416.0 518 51.4
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 4.9e-114 415.6 499 52.1
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 8.4e-114 414.8 531 50.7
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.9e-113 413.7 476 52.9
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 5.4e-113 412.1 496 52.8
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.2e-112 411.0 526 50.8
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 2.7e-112 409.8 473 53.3
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.5e-112 409.5 518 51.0
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 1.0e-111 407.9 494 54.7
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.3e-111 407.5 509 52.5
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 5.1e-111 405.6 477 54.3
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 2.5e-110 403.3 477 53.9
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 3.3e-110 402.9 466 54.3
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 9.6e-110 401.4 538 49.4
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 9.6e-110 401.4 474 53.8
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.6e-109 400.6 473 52.9
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 2.8e-109 399.8 458 53.3
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.8e-109 399.1 478 52.9
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 2.4e-108 396.7 495 51.9
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 6.9e-108 395.2 522 48.9
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.4e-107 392.9 498 50.8
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 5.8e-107 392.1 475 52.8
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 9.9e-107 391.3 536 48.5
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 9.9e-107 391.3 536 48.5
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.9e-106 389.8 479 52.2
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 3.8e-106 389.4 483 51.6
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 8.4e-106 388.3 443 55.5
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.4e-105 387.5 483 52.4
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 2.4e-105 386.7 476 50.8
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.2e-104 384.4 485 49.7
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 2.1e-104 383.6 489 50.3
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 6.0e-104 382.1 550 48.9
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 6.0e-104 382.1 550 48.9
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 5.6e-102 375.6 536 47.6
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.3e-101 374.4 440 51.8
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 3.7e-101 372.9 452 52.9
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 6.9e-100 368.6 488 49.4
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 4.5e-99 365.9 448 52.7
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.8e-99 365.5 468 50.0
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 3.2e-97 359.8 511 47.6
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 7.1e-97 358.6 538 45.7
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.2e-96 357.8 480 49.0
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.6e-96 357.5 479 49.3
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.8e-95 354.0 479 48.4
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 3.3e-94 349.7 377 56.2
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 2.1e-93 347.1 501 48.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.8e-92 344.0 537 45.8
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.0e-91 340.5 348 59.8
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 5.9e-91 339.0 499 46.3
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 6.5e-90 335.5 544 43.9
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 9.3e-89 331.6 524 45.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 2.7e-88 330.1 470 47.9
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.7e-86 322.4 405 50.4
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.6e-85 320.9 464 47.6
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.7e-74 284.3 245 64.5
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 2.2e-74 283.9 629 35.5
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 4.7e-72 276.2 286 54.9
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 4.8e-69 266.2 615 36.6
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 4.5e-67 259.6 267 56.2
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.0e-66 258.5 262 56.9
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.2e-66 257.3 300 52.7
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 3.8e-66 256.5 304 53.6
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 3.7e-61 240.0 318 46.9
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.2e-57 226.5 248 56.0
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 6.8e-55 219.2 248 55.6
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 7.5e-46 189.1 452 35.0
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 3.7e-45 186.8 250 47.6
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 8.3e-45 185.7 224 52.7
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.7e-42 177.9 200 57.5
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 6.1e-40 169.5 235 46.4
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 8.0e-40 169.1 205 55.6
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.4e-38 163.7 222 48.2
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 4.4e-38 163.3 228 47.8
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 9.2e-36 155.6 143 58.0
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.6e-35 154.8 177 51.4
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.9e-34 150.2 238 44.5
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 2.6e-30 137.5 142 58.5
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 4.1e-28 130.2 131 55.0
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 8.6e-26 122.5 154 46.8
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 9.5e-25 119.0 68 88.2
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 4.7e-24 116.7 70 85.7
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 6.6e-18 96.3 376 25.5
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 8.4e-13 79.3 88 52.3
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 2.5e-09 67.8 130 39.2
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-08 65.5 39 82.1
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 8.1e-08 62.8 108 41.7
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.8e-07 61.6 136 36.8


User provided reference genes

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