Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G29340 Arabidopsis thaliana HOM05D011853 ORTHO05D014034 0.0e+00 1300.8 651 100.0
AL5G19400 Arabidopsis lyrata HOM05D011853 ORTHO05D014034 1.7e-120 437.6 463 56.8
AL5G19420 Arabidopsis lyrata HOM05D011853 ORTHO05D014034 1.0e-117 428.3 387 63.8
Carub.0005s0804 Capsella rubella HOM05D011853 ORTHO05D014034 2.3e-93 347.4 322 62.4
Carub.0005s0805 Capsella rubella HOM05D011853 ORTHO05D014034 1.2e-89 335.1 606 41.3
AT4G04404 Arabidopsis thaliana HOM05D011853 ORTHO05D014034 9.3e-42 176.0 254 46.1
C07p38220 Brassica napus HOM05D011853 ORTHO05D014034 4.3e-31 140.6 360 36.7
BcaC06g30871 Brassica carinata HOM05D011853 ORTHO05D014034 1.8e-29 135.2 232 44.4
A06p39940 Brassica napus HOM05D011853 ORTHO05D014034 4.5e-28 130.6 357 33.9
BraA06t26909Z Brassica rapa HOM05D011853 ORTHO05D014034 4.5e-28 130.6 357 33.9
BcaC06g33688 Brassica carinata HOM05D011853 ORTHO05D014034 1.3e-27 129.0 362 34.0
Sp2g17930 Schrenkiella parvula HOM05D011853 ORTHO05D014034 1.9e-26 125.2 406 32.3
BolC7t44344H Brassica oleracea HOM05D011853 ORTHO05D014034 5.1e-24 117.1 363 32.5
Thhalv10005658m.g Eutrema salsugineum HOM05D011853 ORTHO05D014034 1.4e-21 109.0 252 34.1
THA.LOC104805505 Tarenaya hassleriana HOM05D011853 ORTHO05D014034 4.2e-10 70.9 169 34.3
DCAR_008494 Daucus carota HOM05D000174 ORTHO05D001708 3.6e-09 67.8 81 40.7
HPP92_022422 Vanilla planifolia HOM05D000174 ORTHO05D001526 1.0e-08 66.2 403 21.6
Gohir.D09G088300 Gossypium hirsutum HOM05D000174 ORTHO05D001106 3.0e-08 64.7 123 32.5
Gorai.006G104800 Gossypium raimondii HOM05D000174 ORTHO05D001106 3.0e-08 64.7 123 32.5
DCAR_006833 Daucus carota HOM05D000174 ORTHO05D001708 3.9e-08 64.3 114 33.3
Gohir.A09G088600 Gossypium hirsutum HOM05D000174 ORTHO05D001106 6.7e-08 63.5 136 30.9
AUR62013688 Chenopodium quinoa HOM05D001867 ORTHO05D001708 8.8e-08 63.2 138 28.3
Aa31LG1G11350 Aethionema arabicum HOM05D001867 ORTHO05D001708 1.1e-07 62.8 105 35.2
BcaB06g26027 Brassica carinata HOM05D000174 ORTHO05D000630 1.1e-07 62.8 85 38.8
ECA236G3102 Erigeron canadensis HOM05D000174 ORTHO05D000630 1.1e-07 62.8 134 28.4
Dinv21642 Davidia involucrata HOM05D001867 ORTHO05D001708 1.5e-07 62.4 145 28.3
Rhsim13G0100600 Rhododendron simsii HOM05D000174 ORTHO05D001106 1.5e-07 62.4 132 32.6
MD00G1156100 Malus domestica HOM05D001658 ORTHO05D001406 2.0e-07 62.0 108 33.3
Potri.004G118100 Populus trichocarpa HOM05D001658 ORTHO05D001406 2.0e-07 62.0 534 21.2
PSO832G3188 Papaver somniferum HOM05D000174 ORTHO05D000795 2.5e-07 61.6 117 33.3
PGR031G1920 Punica granatum HOM05D000174 ORTHO05D000630 3.3e-07 61.2 103 33.0
Manes.14G036900 Manihot esculenta HOM05D001867 ORTHO05D001708 4.3e-07 60.8 119 34.5
Sp3g17620 Schrenkiella parvula HOM05D000174 ORTHO05D000630 4.3e-07 60.8 85 37.6
Sc20g0001560 Simmondsia chinensis HOM05D000174 ORTHO05D001106 4.3e-07 60.8 108 30.6
MSTRG.9603 Avicennia marina HOM05D001658 ORTHO05D001406 5.7e-07 60.5 478 23.6
BraA01t03592Z Brassica rapa HOM05D000174 ORTHO05D000630 5.7e-07 60.5 83 38.6
Carub.0003s1942 Capsella rubella HOM05D000174 ORTHO05D000630 5.7e-07 60.5 120 34.2
Gorai.012G049800 Gossypium raimondii HOM05D001658 ORTHO05D001406 5.7e-07 60.5 339 24.8
BcaC05g28445 Brassica carinata HOM05D000174 ORTHO05D000630 7.4e-07 60.1 85 37.6
C05p45300 Brassica napus HOM05D000174 ORTHO05D000630 7.4e-07 60.1 85 37.6
BolC5t33253H Brassica oleracea HOM05D000174 ORTHO05D000630 7.4e-07 60.1 85 37.6
CARHR197830 Cardamine hirsuta HOM05D010061 ORTHO05D014864 7.4e-07 60.1 84 39.3
Thhalv10021307m.g Eutrema salsugineum HOM05D000174 ORTHO05D000630 7.4e-07 60.1 88 36.4
Manes.02G053200 Manihot esculenta HOM05D001658 ORTHO05D001406 7.4e-07 60.1 152 30.9
Manes.14G084100 Manihot esculenta HOM05D001658 ORTHO05D001406 7.4e-07 60.1 467 21.4
Phvul.010G071300 Phaseolus vulgaris HOM05D001867 ORTHO05D001708 7.4e-07 60.1 87 37.9
Potri.014G017300 Populus trichocarpa HOM05D000174 ORTHO05D000630 7.4e-07 60.1 105 34.3
BcaNung06934 Brassica carinata HOM05D000174 ORTHO05D000630 9.7e-07 59.7 83 38.6
A01p35100 Brassica napus HOM05D000174 ORTHO05D000630 9.7e-07 59.7 83 38.6
C01p44530 Brassica napus HOM05D000174 ORTHO05D000630 9.7e-07 59.7 83 38.6
BolC1t04419H Brassica oleracea HOM05D000174 ORTHO05D000630 9.7e-07 59.7 83 38.6
Dinv42227 Davidia involucrata HOM05D000174 ORTHO05D000630 9.7e-07 59.7 82 39.0
FAN03G0186 Fragaria x ananassa HOM05D000174 ORTHO05D001526 9.7e-07 59.7 445 20.9
FAN11G3905 Fragaria x ananassa HOM05D000174 ORTHO05D000795 9.7e-07 59.7 446 22.2
Gohir.D04G044500 Gossypium hirsutum HOM05D001658 ORTHO05D001406 9.7e-07 59.7 339 24.8
Gohir.D06G020700 Gossypium hirsutum HOM05D000174 ORTHO05D000630 9.7e-07 59.7 106 31.1
VMungo0331G0147 Vigna mungo HOM05D001867 ORTHO05D001708 9.7e-07 59.7 87 37.9
CiPaw.13G031800 Carya illinoinensis HOM05D000174 ORTHO05D001526 1.3e-06 59.3 482 22.2
DCAR_001685 Daucus carota HOM05D000174 ORTHO05D000630 1.3e-06 59.3 106 31.1
Duzib187G0503 Durio zibethinus HOM05D001658 ORTHO05D001406 1.3e-06 59.3 121 30.6
QL04p036037 Quercus lobata HOM05D001867 ORTHO05D001708 1.3e-06 59.3 87 33.3
CSS0006199 Camellia sinensis var. sinensis HOM05D001658 ORTHO05D001406 1.7e-06 58.9 542 22.0
Thhalv10015968m.g Eutrema salsugineum HOM05D010061 ORTHO05D014864 1.7e-06 58.9 92 34.8
Gohir.A05G371200 Gossypium hirsutum HOM05D001658 ORTHO05D001406 1.7e-06 58.9 339 23.9
Gorai.010G025200 Gossypium raimondii HOM05D000174 ORTHO05D000630 1.7e-06 58.9 106 31.1
Lalb_Chr23g0267461 Lupinus albus HOM05D000174 ORTHO05D000630 1.7e-06 58.9 88 38.6
RcHm_v2.0_Chr6g0262421 Rosa chinensis HOM05D000174 ORTHO05D025488 1.7e-06 58.9 202 25.7
TWI15G0313 Tripterygium wilfordii HOM05D001658 ORTHO05D001406 1.7e-06 58.9 105 32.4
Ah.06g194220 Amaranthus hybridus HOM05D000174 ORTHO05D001106 2.2e-06 58.5 126 29.4
CiPaw.05G016600 Carya illinoinensis HOM05D000174 ORTHO05D000630 2.2e-06 58.5 98 32.7
Lalb_Chr03g0039831 Lupinus albus HOM05D001867 ORTHO05D001708 2.2e-06 58.5 113 33.6
Manes.05G180900 Manihot esculenta HOM05D000174 ORTHO05D000630 2.2e-06 58.5 115 32.2
Rhsim01G0135400 Rhododendron simsii HOM05D001867 ORTHO05D001708 2.2e-06 58.5 100 33.0
Ciclev10020499m.g Citrus clementina HOM05D001867 ORTHO05D001708 2.8e-06 58.2 111 34.2
FAN22G1484 Fragaria x ananassa HOM05D001658 ORTHO05D001406 2.8e-06 58.2 497 22.7
Hma1.2p1_1174F.1_g263760 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 2.8e-06 58.2 106 30.2
Hma1.2p1_3101F.1_g332705 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 2.8e-06 58.2 106 30.2
BcaB04g20693 Brassica carinata HOM05D000174 ORTHO05D000630 3.7e-06 57.8 116 31.0
BcaC01g03619 Brassica carinata HOM05D000174 ORTHO05D000630 3.7e-06 57.8 83 33.7
C03p50440 Brassica napus HOM05D000174 ORTHO05D000630 3.7e-06 57.8 83 33.7
BolC3t17336H Brassica oleracea HOM05D000174 ORTHO05D000630 3.7e-06 57.8 83 33.7
HanXRQChr14g0452091 Helianthus annuus HOM05D000174 ORTHO05D001106 3.7e-06 57.8 128 31.2
Oeu000601.1 Olea europaea HOM05D000174 ORTHO05D001106 3.7e-06 57.8 165 24.8
Peaxi162Scf00003g00267 Petunia axillaris HOM05D000174 ORTHO05D000630 3.7e-06 57.8 81 35.8
Prupe.2G136700 Prunus persica HOM05D001867 ORTHO05D001708 3.7e-06 57.8 96 29.2
PGR031G0171 Punica granatum HOM05D000174 ORTHO05D000630 3.7e-06 57.8 106 31.1
A03p41300 Brassica napus HOM05D000174 ORTHO05D000630 4.8e-06 57.4 82 34.1
COL.COLO4_12481 Corchorus olitorius HOM05D001867 ORTHO05D001708 4.8e-06 57.4 92 33.7
Duzib133G0217 Durio zibethinus HOM05D001867 ORTHO05D001708 4.8e-06 57.4 96 33.3
Nitab4.5_0000569g0020 Nicotiana tabacum HOM05D000174 ORTHO05D000630 4.8e-06 57.4 90 38.9
TPR.G27085 Trifolium pratense HOM05D000174 ORTHO05D000630 4.8e-06 57.4 81 35.8
FvH4_7g10990 Fragaria vesca HOM05D001867 ORTHO05D001708 6.3e-06 57.0 103 33.0
Gohir.A06G023600 Gossypium hirsutum HOM05D000174 ORTHO05D000630 6.3e-06 57.0 106 31.1
MD05G1098300 Malus domestica HOM05D000174 ORTHO05D000630 6.3e-06 57.0 79 38.0
Oeu005826.1 Olea europaea HOM05D001867 ORTHO05D001708 6.3e-06 57.0 93 28.0
Rhsim01G0210500 Rhododendron simsii HOM05D000174 ORTHO05D001106 6.3e-06 57.0 146 26.7
THA.LOC104807072 Tarenaya hassleriana HOM05D000174 ORTHO05D000630 6.3e-06 57.0 91 35.2
HPP92_027490 Vanilla planifolia HOM05D000174 ORTHO05D001106 6.3e-06 57.0 85 32.9
Atru.chr9.385 Acer truncatum HOM05D001658 ORTHO05D001406 8.2e-06 56.6 90 33.3
BcaB07g33441 Brassica carinata HOM05D000174 ORTHO05D000630 8.2e-06 56.6 88 35.2
BcaB07g33442 Brassica carinata HOM05D000174 ORTHO05D000630 8.2e-06 56.6 88 35.2
BraA05t21845Z Brassica rapa HOM05D000174 ORTHO05D000630 8.2e-06 56.6 172 29.1
CANSAT25G1422 Cannabis sativa HOM05D000174 ORTHO05D000630 8.2e-06 56.6 84 38.1
Duzib041G0581 Durio zibethinus HOM05D000174 ORTHO05D000630 8.2e-06 56.6 87 34.5
Duzib138G0074 Durio zibethinus HOM05D001867 ORTHO05D001708 8.2e-06 56.6 92 32.6
Eucgr.G01247 Eucalyptus grandis HOM05D000174 ORTHO05D000630 8.2e-06 56.6 85 36.5
Hma1.2p1_1023F.1_g248850 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 8.2e-06 56.6 81 33.3
Hma1.2p1_1773F.1_g301705 Hydrangea macrophylla HOM05D000174 ORTHO05D000630 8.2e-06 56.6 81 33.3
Nn2g12894 Nelumbo nucifera HOM05D000174 ORTHO05D000795 8.2e-06 56.6 79 32.9
Peaxi162Scf00013g00059 Petunia axillaris HOM05D001658 ORTHO05D001406 8.2e-06 56.6 100 35.0
Peaxi162Scf00106g00091 Petunia axillaris HOM05D001658 ORTHO05D001406 8.2e-06 56.6 521 22.6
unitig_0.g679 Utricularia gibba HOM05D000174 ORTHO05D001106 8.2e-06 56.6 102 31.4
GSVIVG01037364001 Vitis vinifera HOM05D000174 ORTHO05D001526 8.2e-06 56.6 106 34.9


User provided reference genes

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