Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 1.4e-44 182.6 92 100.0
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 1.4e-39 166.0 87 95.4
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 1.4e-39 166.0 87 95.4
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 1.8e-39 165.6 87 95.4
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 3.0e-39 164.9 87 94.3
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 8.8e-39 163.3 87 93.1
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 1.5e-38 162.5 87 92.0
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 1.5e-38 162.5 87 92.0
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 1.5e-38 162.5 87 92.0
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 9.7e-38 159.8 87 90.8
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 9.7e-38 159.8 87 90.8
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 1.7e-37 159.1 87 89.7
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 2.4e-36 155.2 85 89.4
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 2.7e-32 141.7 87 78.2
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 2.7e-32 141.7 87 77.0
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 4.7e-32 141.0 87 74.7
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 6.1e-32 140.6 85 75.3
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 6.1e-32 140.6 87 77.0
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 1.4e-31 139.4 87 75.9
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 1.8e-31 139.0 86 75.6
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 1.8e-31 139.0 87 75.9
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 3.0e-31 138.3 85 76.5
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 5.2e-31 137.5 87 74.7
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 5.2e-31 137.5 87 74.7
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 6.7e-31 137.1 87 73.6
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 8.8e-31 136.7 87 72.4
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 8.8e-31 136.7 87 72.4
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 8.8e-31 136.7 86 73.3
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 2.0e-30 135.6 87 74.7
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 2.0e-30 135.6 87 73.6
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 2.6e-30 135.2 87 74.7
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 4.4e-30 134.4 85 71.8
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 5.7e-30 134.0 87 72.4
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 5.7e-30 134.0 87 73.6
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 5.7e-30 134.0 87 72.4
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 7.5e-30 133.7 87 73.6
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 7.5e-30 133.7 85 75.3
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 9.7e-30 133.3 87 71.3
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 9.7e-30 133.3 87 70.1
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 9.7e-30 133.3 87 70.1
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 9.7e-30 133.3 87 70.1
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 9.7e-30 133.3 87 71.3
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 2.2e-29 132.1 142 54.9
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 2.2e-29 132.1 87 71.3
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 2.2e-29 132.1 85 72.9
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 2.2e-29 132.1 85 72.9
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 2.2e-29 132.1 85 72.9
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 2.2e-29 132.1 85 72.9
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 2.2e-29 132.1 85 74.1
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 2.2e-29 132.1 87 72.4
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 2.8e-29 131.7 87 73.6
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 2.8e-29 131.7 87 70.1
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 2.8e-29 131.7 87 70.1
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 3.7e-29 131.3 87 71.3
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 3.7e-29 131.3 87 71.3
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 3.7e-29 131.3 87 73.6
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 4.8e-29 131.0 87 70.1
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 4.8e-29 131.0 87 70.1
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 4.8e-29 131.0 85 71.8
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 1.1e-28 129.8 85 71.8
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 1.1e-28 129.8 85 74.1
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 1.1e-28 129.8 85 68.2
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 1.1e-28 129.8 87 72.4
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 1.4e-28 129.4 85 71.8
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 1.4e-28 129.4 87 70.1
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 1.8e-28 129.0 83 72.3
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.8e-28 129.0 87 69.0
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 2.4e-28 128.6 87 73.6
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 2.4e-28 128.6 84 72.6
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 2.4e-28 128.6 85 68.2
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 2.4e-28 128.6 87 72.4
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 2.4e-28 128.6 85 68.2
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 3.1e-28 128.3 87 70.1
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 7.0e-28 127.1 85 71.8
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 7.0e-28 127.1 85 71.8
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 7.0e-28 127.1 87 70.1
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 2.0e-27 125.6 85 67.1
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 3.5e-27 124.8 85 67.1
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 4.5e-27 124.4 87 67.8
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 5.9e-27 124.0 85 68.2
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 1.0e-26 123.2 85 71.8
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 1.0e-26 123.2 86 66.3
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 1.3e-26 122.9 83 72.3
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 1.7e-26 122.5 85 68.2
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 1.7e-26 122.5 118 55.1
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 1.7e-26 122.5 85 69.4
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 3.8e-26 121.3 85 65.9
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 1.5e-25 119.4 103 57.3
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 2.5e-25 118.6 85 67.1
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 4.2e-25 117.9 83 69.9
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 7.2e-25 117.1 84 64.3
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 7.2e-25 117.1 85 64.7
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 1.5e-22 109.4 83 61.4
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 2.6e-22 108.6 82 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 3.1e-20 101.7 86 57.0
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 3.5e-19 98.2 87 56.3
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 4.5e-19 97.8 87 57.5
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 3.8e-18 94.7 83 51.8
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 5.0e-18 94.4 85 50.6
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 6.1e-16 87.4 58 65.5
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 1.0e-15 86.7 63 63.5
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 2.0e-14 82.4 53 73.6
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 2.0e-14 82.4 53 73.6
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 2.6e-14 82.0 60 63.3
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 3.4e-14 81.6 53 67.9
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 4.4e-14 81.3 53 71.7
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 5.7e-14 80.9 53 71.7
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 1.3e-13 79.7 52 67.3
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 3.7e-13 78.2 52 69.2
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 1.2e-11 73.2 52 65.4
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 1.2e-11 73.2 49 65.3
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 6.6e-10 67.4 84 42.9
THA.LOC104805965 Tarenaya hassleriana HOM05D000199 ORTHO05D000550 1.5e-06 56.2 32 84.4


User provided reference genes

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