Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 2.3e-36 155.2 87 100.0
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 8.9e-33 143.3 87 94.3
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 9.8e-32 139.8 87 90.8
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 6.4e-31 137.1 87 90.8
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 4.6e-29 131.0 87 83.9
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 4.6e-29 131.0 87 83.9
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 8.6e-28 126.7 88 84.1
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 8.6e-28 126.7 88 84.1
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 8.6e-28 126.7 88 84.1
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 8.6e-28 126.7 88 84.1
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 3.6e-26 121.3 88 81.8
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 3.6e-26 121.3 88 81.8
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 8.9e-25 116.7 88 79.5
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 1.5e-24 115.9 87 78.2
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 2.0e-24 115.5 88 79.5
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.0e-24 115.5 87 78.2
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 5.8e-24 114.0 88 78.4
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 5.8e-24 114.0 88 78.4
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 7.5e-24 113.6 87 77.0
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 7.5e-24 113.6 87 77.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-22 109.8 88 76.1
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 2.1e-18 95.5 84 65.5
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.1e-17 91.7 87 63.2
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 7.6e-16 87.0 85 63.5
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 9.9e-16 86.7 57 77.2
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 3.6e-10 68.2 52 67.3
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 2.4e-09 65.5 52 65.4
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 3.1e-09 65.1 52 63.5
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 3.1e-09 65.1 52 63.5
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 4.0e-09 64.7 53 62.3
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 4.0e-09 64.7 52 61.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 4.0e-09 64.7 52 65.4
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 4.0e-09 64.7 52 61.5
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 65.4
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 6.9e-09 63.9 53 58.5
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 9.0e-09 63.5 51 62.7
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 9.0e-09 63.5 48 68.8
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 1.5e-08 62.8 50 66.0
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 2.6e-08 62.0 52 61.5
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 7.6e-08 60.5 52 55.8
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 7.6e-08 60.5 52 57.7
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 9.9e-08 60.1 50 54.0
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 9.9e-08 60.1 52 59.6
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 1.3e-07 59.7 52 59.6
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 2.2e-07 58.9 74 48.6
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 4.9e-07 57.8 51 58.8
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 8.4e-07 57.0 52 55.8
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.1e-06 56.6 53 52.8
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 1.9e-06 55.8 52 53.8
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 3.2e-06 55.1 50 52.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 3.2e-06 55.1 50 52.0
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 53.8
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 57.7
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 57.7
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 4.2e-06 54.7 52 57.7
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 9.3e-06 53.5 52 50.0


User provided reference genes

Program Settings