Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28853 Arabidopsis thaliana HOM05D011773 ORTHO05D013456 1.2e-64 249.6 121 100.0
AL1G60030 Arabidopsis lyrata HOM05D011773 ORTHO05D013456 4.1e-20 101.7 116 47.4
CARHR042140 Cardamine hirsuta HOM05D011773 ORTHO05D013456 1.1e-17 93.6 122 40.2
AL1G60020 Arabidopsis lyrata HOM05D011773 ORTHO05D013456 4.7e-16 88.2 123 43.1
C09p27980 Brassica napus HOM05D011773 ORTHO05D013456 1.1e-15 87.0 108 41.7
Thhalv10022043m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 1.4e-15 86.7 117 38.5
Carub.0001s4092 Capsella rubella HOM05D011773 ORTHO05D013456 1.8e-15 86.3 121 42.1
AT1G51970 Arabidopsis thaliana HOM05D011773 ORTHO05D013456 6.8e-15 84.3 121 43.8
AT1G10455 Arabidopsis thaliana HOM05D011773 ORTHO05D013456 2.0e-14 82.8 113 40.7
BolC9t55657H Brassica oleracea HOM05D011773 ORTHO05D013456 5.8e-14 81.3 108 40.7
AL1G21240 Arabidopsis lyrata HOM05D011773 ORTHO05D013456 7.5e-14 80.9 119 38.7
Thhalv10019518m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 7.5e-14 80.9 115 36.5
BcaB01g04090 Brassica carinata HOM05D011773 ORTHO05D013456 7.1e-12 74.3 125 32.8
Thhalv10005614m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 3.0e-10 68.9 115 33.9
RcHm_v2.0_Chr1g0351961 Rosa chinensis HOM05D001713 ORTHO05D001669 1.1e-09 67.0 104 35.6
A05p20220 Brassica napus HOM05D008606 ORTHO05D011380 2.5e-09 65.9 109 38.5
BraA05t20932Z Brassica rapa HOM05D008606 ORTHO05D011380 2.5e-09 65.9 109 38.5
Lj6g0015270 Lotus japonicus HOM05D001713 ORTHO05D001669 4.3e-09 65.1 104 35.6
QL02p074896 Quercus lobata HOM05D001713 ORTHO05D001669 2.1e-08 62.8 118 37.3
QL02p075014 Quercus lobata HOM05D001713 ORTHO05D001669 2.1e-08 62.8 118 37.3
QL08p058986 Quercus lobata HOM05D001713 ORTHO05D001669 4.7e-08 61.6 116 31.0
BcaC05g27441 Brassica carinata HOM05D008606 ORTHO05D011380 6.2e-08 61.2 109 37.6
C05p33960 Brassica napus HOM05D008606 ORTHO05D011380 6.2e-08 61.2 109 37.6
BolC5t32130H Brassica oleracea HOM05D008606 ORTHO05D011380 6.2e-08 61.2 109 37.6
Carub.0006s2899 Capsella rubella HOM05D008606 ORTHO05D014886 1.1e-07 60.5 109 32.1
Carub.0240s0002 Capsella rubella HOM05D008606 ORTHO05D014886 1.1e-07 60.5 109 32.1
Thhalv10019801m.g Eutrema salsugineum HOM05D011773 ORTHO05D013456 1.1e-07 60.5 69 46.4
BcaB04g20136 Brassica carinata HOM05D008606 ORTHO05D011380 1.4e-07 60.1 121 33.1
FAN06G2933 Fragaria x ananassa HOM05D001713 ORTHO05D001669 1.4e-07 60.1 104 32.7
Sopen08g024550 Solanum pennellii HOM05D001713 ORTHO05D001669 1.8e-07 59.7 104 33.7
CARHR112950 Cardamine hirsuta HOM05D008606 ORTHO05D014886 2.3e-07 59.3 108 33.3
FvH4_7g12901 Fragaria vesca HOM05D001713 ORTHO05D001669 2.3e-07 59.3 104 31.7
BcaB07g33665 Brassica carinata HOM05D008606 ORTHO05D011380 3.1e-07 58.9 121 33.1
BcaNung04519 Brassica carinata HOM05D008606 ORTHO05D011380 5.2e-07 58.2 106 34.0
BcaNung04520 Brassica carinata HOM05D008606 ORTHO05D011380 6.8e-07 57.8 106 34.0
Lj6g0000820 Lotus japonicus HOM05D001713 ORTHO05D001669 6.8e-07 57.8 103 33.0
Nitab4.5_0000390g0070 Nicotiana tabacum HOM05D001713 ORTHO05D001669 6.8e-07 57.8 103 31.1
Nitab4.5_0001033g0070 Nicotiana tabacum HOM05D001713 ORTHO05D001669 6.8e-07 57.8 103 31.1
Peaxi162Scf00675g00011 Petunia axillaris HOM05D001713 ORTHO05D001669 6.8e-07 57.8 104 31.7
PGSC0003DMG400037310 Solanum tuberosum HOM05D001713 ORTHO05D001669 6.8e-07 57.8 104 32.7
FAN21G3366 Fragaria x ananassa HOM05D001713 ORTHO05D001669 8.9e-07 57.4 100 38.0
FAN25G2775 Fragaria x ananassa HOM05D001713 ORTHO05D001669 8.9e-07 57.4 100 38.0
Haze_03476 Corylus avellana HOM05D001713 ORTHO05D001669 1.2e-06 57.0 116 32.8
PGSC0003DMG400036318 Solanum tuberosum HOM05D001713 ORTHO05D001669 1.2e-06 57.0 104 32.7
PGSC0003DMG400039957 Solanum tuberosum HOM05D001713 ORTHO05D001669 1.2e-06 57.0 104 33.7
BcaB07g33664 Brassica carinata HOM05D008606 ORTHO05D011380 2.0e-06 56.2 106 33.0
Solyc08g075900.1 Solanum lycopersicum HOM05D001713 ORTHO05D001669 2.0e-06 56.2 104 32.7
TPR.G32054 Trifolium pratense HOM05D001713 ORTHO05D001669 2.0e-06 56.2 101 33.7
Lsat_1_v5_gn_5_105860 Lactuca sativa HOM05D008710 ORTHO05D010926 2.6e-06 55.8 104 33.7
Oeu049832.1 Olea europaea HOM05D008710 ORTHO05D010926 2.6e-06 55.8 103 37.9
FAN06G2508 Fragaria x ananassa HOM05D001713 ORTHO05D001669 3.4e-06 55.5 104 30.8
Medtr6g004120 Medicago truncatula HOM05D001713 ORTHO05D001669 3.4e-06 55.5 100 32.0
Nitab4.5_0006036g0010 Nicotiana tabacum HOM05D001713 ORTHO05D001669 3.4e-06 55.5 103 31.1
Carub.0006s2897 Capsella rubella HOM05D008606 ORTHO05D014886 4.4e-06 55.1 106 34.0
FAN03G0160 Fragaria x ananassa HOM05D001713 ORTHO05D001669 4.4e-06 55.1 104 28.8
Carub.0004s0101 Capsella rubella HOM05D008606 ORTHO05D014886 5.8e-06 54.7 112 32.1
FAN10G3735 Fragaria x ananassa HOM05D001713 ORTHO05D001669 5.8e-06 54.7 102 30.4
Carub.0004s0094 Capsella rubella HOM05D008606 ORTHO05D014886 7.6e-06 54.3 106 33.0
FvH4_3g45250 Fragaria vesca HOM05D001713 ORTHO05D001669 7.6e-06 54.3 95 37.9
FAN11G3165 Fragaria x ananassa HOM05D001713 ORTHO05D001669 7.6e-06 54.3 95 37.9
HanXRQChr10g0294711 Helianthus annuus HOM05D008710 ORTHO05D010926 7.6e-06 54.3 104 33.7
Lj6g0011540 Lotus japonicus HOM05D001713 ORTHO05D001669 9.9e-06 53.9 103 31.1
SGA_v2.0_scaffold338G49222 Striga asiatica HOM05D008710 ORTHO05D010926 9.9e-06 53.9 106 34.9


User provided reference genes

Program Settings