Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.4e-276 955.7 472 100.0
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 3.3e-267 924.5 472 95.8
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 7.4e-267 923.3 472 95.3
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 1.4e-257 892.5 475 91.8
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 6.8e-252 873.6 479 89.8
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.7e-248 861.7 478 88.1
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 7.7e-248 860.1 477 88.1
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 7.7e-248 860.1 477 88.1
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 1.3e-247 859.4 479 87.9
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 3.8e-247 857.8 477 87.2
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 3.8e-247 857.8 477 87.2
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 1.0e-244 849.7 483 85.9
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 2.5e-230 802.0 475 82.1
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 7.5e-227 790.4 436 88.5
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 2.8e-213 745.3 483 75.8
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 6.2e-213 744.2 467 80.5
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.8e-212 742.7 483 75.4
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 4.9e-210 734.6 485 75.3
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 6.4e-210 734.2 478 74.1
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 8.4e-210 733.8 481 74.2
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.1e-208 729.2 487 72.7
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 1.3e-207 726.5 487 73.3
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 3.9e-207 724.9 486 73.7
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.5e-206 723.0 482 74.5
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 7.3e-206 720.7 484 72.7
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 1.6e-205 719.5 495 72.5
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 2.1e-205 719.2 485 73.0
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 3.6e-205 718.4 501 72.3
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.4e-204 716.5 466 74.2
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.8e-204 716.1 490 72.7
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 4.0e-204 714.9 469 73.1
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 1.2e-203 713.4 485 72.2
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 1.5e-203 713.0 486 71.8
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 2.6e-203 712.2 489 71.8
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 2.6e-203 712.2 480 73.1
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 3.4e-203 711.8 483 72.5
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 1.3e-202 709.9 496 70.6
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 1.3e-202 709.9 483 72.9
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 2.9e-202 708.8 487 71.5
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 4.9e-202 708.0 422 78.2
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 6.4e-202 707.6 489 71.2
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 6.4e-202 707.6 428 77.6
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 6.4e-202 707.6 484 71.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 1.1e-201 706.8 486 71.2
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 1.1e-201 706.8 434 77.0
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 1.4e-201 706.4 493 71.4
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.2e-201 705.3 482 72.0
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 3.2e-201 705.3 481 72.3
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 4.2e-201 704.9 420 81.4
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 5.4e-201 704.5 491 71.1
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 9.3e-201 703.7 485 73.0
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.2e-200 703.4 424 77.4
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.6e-200 703.0 424 78.5
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 2.1e-200 702.6 434 76.0
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 2.7e-200 702.2 480 70.8
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 3.5e-200 701.8 488 70.3
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 7.8e-200 700.7 435 76.6
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 7.8e-200 700.7 437 76.2
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.0e-199 700.3 487 70.6
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 1.3e-199 699.9 492 70.1
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 1.3e-199 699.9 427 77.0
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 1.3e-199 699.9 428 76.2
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 3.0e-199 698.7 484 70.5
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.6e-199 697.6 425 76.2
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 6.6e-199 697.6 489 71.0
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 6.6e-199 697.6 483 70.6
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 8.7e-199 697.2 533 67.0
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.5e-198 696.4 488 71.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 2.5e-198 695.7 489 70.1
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 3.3e-198 695.3 490 70.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 3.3e-198 695.3 423 77.1
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 3.3e-198 695.3 489 69.5
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.6e-197 693.0 426 76.1
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 4.8e-197 691.4 486 69.5
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 4.8e-197 691.4 485 70.7
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.1e-196 690.3 424 76.2
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.8e-196 689.5 448 74.3
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 6.9e-196 687.6 481 70.7
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 9.0e-196 687.2 444 74.3
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 4.5e-195 684.9 494 68.4
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.9e-195 683.7 427 75.6
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 1.3e-194 683.3 440 74.8
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 2.9e-194 682.2 523 65.8
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 3.8e-194 681.8 521 65.6
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 6.4e-194 681.0 486 68.1
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 7.1e-193 677.6 469 71.2
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.0e-191 672.2 403 78.7
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 4.8e-189 664.8 465 70.1
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 1.1e-188 663.7 473 69.1
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 1.2e-187 660.2 402 80.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.9e-186 655.6 472 69.1
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 4.9e-186 654.8 400 75.8
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 6.4e-186 654.4 394 77.7
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 3.5e-184 648.7 374 79.4
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.9e-183 645.2 545 63.1
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 4.5e-179 631.7 374 77.3
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 5.8e-179 631.3 421 70.8
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 2.5e-177 625.9 410 73.2
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 8.7e-175 617.5 440 69.8
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.1e-172 609.0 476 65.8
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 2.6e-171 605.9 483 65.4
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 3.4e-171 605.5 393 72.5
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 6.1e-168 594.7 433 64.7
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.1e-164 582.4 374 73.0
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.6e-160 570.1 390 69.7
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 3.6e-160 568.9 497 56.1
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 2.0e-158 563.1 340 76.2
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 1.3e-157 560.5 490 59.0
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 1.8e-151 540.0 476 58.2
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 8.8e-151 537.7 377 70.3
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 4.7e-144 515.4 293 84.6
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 4.7e-144 515.4 293 84.6
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 9.7e-142 507.7 481 53.4
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 1.6e-139 500.4 326 73.6
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 8.3e-133 478.0 291 80.4
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 3.4e-126 456.1 260 85.4
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 9.8e-126 454.5 281 79.0
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 1.6e-123 447.2 266 83.5
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 1.5e-121 440.7 290 77.2
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 2.2e-117 426.8 256 75.8
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 1.2e-115 421.0 391 54.0
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 6.8e-111 405.2 348 58.9
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 2.5e-89 333.6 383 44.4
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 3.5e-83 313.2 208 70.7
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 3.1e-79 300.1 333 45.6
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 2.4e-76 290.4 233 68.7
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 2.5e-73 280.4 580 33.3
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 1.6e-67 261.2 247 53.4
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 3.9e-50 203.4 522 32.0
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 1.1e-44 185.3 110 78.2
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.2e-35 155.2 112 65.2
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 3.0e-34 150.6 95 73.7
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 4.2e-28 130.2 65 92.3
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 5.5e-28 129.8 64 93.8
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 7.2e-28 129.4 82 67.1
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 9.4e-28 129.0 94 69.1
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 1.2e-27 128.6 65 90.8
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 1.2e-27 128.6 65 90.8
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.6e-27 128.3 65 90.8
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 2.1e-27 127.9 66 89.4
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 2.1e-27 127.9 65 92.3
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 2.7e-27 127.5 65 92.3
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 3.6e-27 127.1 65 89.2
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 4.7e-27 126.7 64 90.6
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 6.1e-27 126.3 65 89.2
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.5e-25 121.7 74 82.4
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 3.6e-19 100.5 60 71.7
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 1.7e-16 91.7 53 71.7
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.9e-14 83.2 69 63.8
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 5.2e-10 70.1 84 46.4
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 8.3e-08 62.8 45 68.9
GSVIVG01021633001 Vitis vinifera HOM05D001960 ORTHO05D439898 1.4e-07 62.0 42 69.0
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 7.8e-06 56.2 47 61.7


User provided reference genes

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