Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.6e-272 942.2 492 100.0
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.8e-255 885.6 492 92.7
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 3.9e-234 814.7 494 86.0
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 3.3e-233 811.6 492 85.0
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 1.4e-231 806.2 492 83.9
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 1.8e-231 805.8 492 84.1
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 5.3e-223 777.7 492 80.7
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 2.0e-222 775.8 492 82.7
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 5.8e-222 774.2 492 82.7
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 2.9e-221 771.9 493 81.5
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 2.9e-221 771.9 493 81.5
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.4e-220 769.6 493 82.6
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 1.3e-205 719.9 492 78.7
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 7.7e-182 641.0 493 68.2
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 7.4e-177 624.4 492 64.8
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 1.5e-153 547.0 494 58.1
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 1.1e-151 540.8 495 58.2
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 7.0e-151 538.1 495 56.8
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 1.7e-149 533.5 495 56.4
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 2.1e-147 526.6 498 55.2
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 6.1e-147 525.0 500 55.6
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 8.0e-147 524.6 495 56.2
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 1.0e-146 524.2 494 55.3
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.4e-146 523.9 498 55.2
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 7.5e-145 518.1 489 56.4
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 3.7e-144 515.8 496 55.8
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 4.9e-144 515.4 502 59.0
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 2.4e-143 513.1 498 53.6
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 3.2e-143 512.7 403 64.5
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 3.2e-143 512.7 468 56.8
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 3.2e-143 512.7 490 54.7
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 7.0e-143 511.5 493 55.0
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 9.2e-143 511.1 519 53.6
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 1.2e-142 510.8 433 60.3
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.5e-140 503.8 488 54.7
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 1.9e-140 503.4 490 53.9
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.1e-138 497.7 490 53.5
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.0e-137 493.4 492 55.1
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 7.5e-137 491.5 496 52.4
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 7.5e-137 491.5 498 52.4
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 1.7e-136 490.3 489 54.6
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 2.2e-136 490.0 463 56.4
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 4.9e-136 488.8 497 52.1
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 4.9e-136 488.8 490 52.4
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 4.1e-135 485.7 494 52.2
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 7.0e-135 485.0 491 52.5
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 1.2e-134 484.2 492 54.9
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 1.2e-134 484.2 491 51.9
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 1.3e-133 480.7 491 53.2
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 1.3e-133 480.7 490 53.3
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 2.3e-133 479.9 451 55.4
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 3.9e-133 479.2 490 51.0
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 5.1e-133 478.8 489 50.9
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 6.6e-133 478.4 489 52.4
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.1e-132 477.6 503 51.1
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 1.9e-132 476.9 495 53.1
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 9.5e-132 474.6 490 53.9
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 9.5e-132 474.6 439 56.0
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 2.1e-131 473.4 499 51.5
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 1.1e-130 471.1 489 51.5
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 1.4e-130 470.7 488 51.6
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 4.0e-130 469.2 490 53.3
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 5.2e-130 468.8 492 50.4
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 5.2e-130 468.8 493 51.7
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 2.6e-129 466.5 503 50.9
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 2.6e-129 466.5 467 54.2
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 5.8e-129 465.3 493 49.5
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 9.9e-129 464.5 496 51.0
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 7.1e-127 458.4 494 50.0
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 7.1e-127 458.4 503 49.9
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 3.0e-125 453.0 478 51.9
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.5e-124 449.9 498 49.8
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 3.3e-124 449.5 491 48.7
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.8e-123 446.4 403 56.6
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 3.6e-123 446.0 462 51.1
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 8.9e-122 441.4 495 48.3
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 2.6e-121 439.9 460 50.9
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 4.4e-121 439.1 495 48.1
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 7.6e-121 438.3 423 53.9
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.4e-119 434.1 497 49.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 7.1e-119 431.8 498 47.8
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.3e-117 427.6 412 53.6
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 1.3e-112 411.0 390 55.4
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 4.2e-111 406.0 492 48.6
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 1.6e-110 404.1 393 54.7
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 2.1e-110 403.7 425 50.4
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 2.5e-108 396.7 502 44.6
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 8.1e-107 391.7 357 56.0
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.4e-106 391.0 494 42.3
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.4e-106 390.2 546 42.9
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 2.4e-106 390.2 496 45.0
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 6.9e-106 388.7 357 56.0
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 6.9e-106 388.7 527 42.5
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.2e-105 387.9 499 42.9
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 3.4e-105 386.3 496 47.6
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 2.1e-102 377.1 357 55.2
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 2.8e-99 366.7 497 42.7
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 1.9e-95 354.0 493 43.0
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 1.3e-93 347.8 284 66.9
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 3.9e-93 346.3 486 41.4
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 2.8e-91 340.1 395 48.1
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 1.4e-90 337.8 489 40.1
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 5.0e-88 329.3 404 45.3
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 1.2e-81 308.1 250 62.0
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 1.7e-72 277.7 350 45.4
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.0e-68 264.2 496 36.5
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 4.8e-67 259.6 506 35.6
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 6.3e-67 259.2 436 35.8
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.2e-61 239.6 272 47.1
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.1e-55 221.9 402 38.1
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.0e-53 215.3 185 58.4
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 9.8e-52 208.8 270 43.3
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 6.3e-51 206.1 288 42.0
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 1.8e-50 204.5 174 57.5
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.5e-47 194.9 240 49.6
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 7.2e-47 192.6 355 37.5
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.7e-40 171.4 142 61.3
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 1.5e-39 168.3 135 62.2
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 6.8e-37 159.5 242 41.7
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 4.4e-36 156.8 369 30.1
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 2.2e-35 154.5 380 29.5
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.2e-33 148.7 108 64.8
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 8.6e-32 142.5 130 53.8
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 4.4e-28 130.2 261 34.9
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 3.2e-26 124.0 140 49.3
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 3.0e-24 117.5 109 58.7
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 2.6e-20 104.4 164 43.3
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 2.2e-19 101.3 87 74.7
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 2.2e-19 101.3 87 74.7
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 5.4e-18 96.7 175 34.3
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 1.3e-16 92.0 417 23.3
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.3e-11 75.5 106 33.0
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 2.9e-11 74.3 112 43.8
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 7.1e-10 69.7 130 31.5


User provided reference genes

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