Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28460 Arabidopsis thaliana HOM05D006434 ORTHO05D008069 7.6e-175 617.1 313 100.0
Carub.0005s0699 Capsella rubella HOM05D006434 ORTHO05D008069 2.9e-142 508.8 277 94.2
AL5G18090 Arabidopsis lyrata HOM05D006434 ORTHO05D008069 1.5e-138 496.5 276 93.1
CARHR292500 Cardamine hirsuta HOM05D006434 ORTHO05D008069 1.0e-123 447.2 277 85.2
Sp2g17230 Schrenkiella parvula HOM05D006434 ORTHO05D008069 7.4e-122 441.0 279 83.9
Thhalv10004634m.g Eutrema salsugineum HOM05D006434 ORTHO05D008069 6.3e-121 438.0 279 83.5
BcaC06g33735 Brassica carinata HOM05D006434 ORTHO05D008069 8.0e-116 421.0 277 81.6
A06p40510 Brassica napus HOM05D006434 ORTHO05D008069 8.8e-115 417.5 282 80.5
BraA06t26970Z Brassica rapa HOM05D006434 ORTHO05D008069 8.8e-115 417.5 282 80.5
C07p37520 Brassica napus HOM05D006434 ORTHO05D008069 1.5e-114 416.8 280 81.1
BolC7t44265H Brassica oleracea HOM05D006434 ORTHO05D008069 7.4e-114 414.5 280 80.7
Aa31LG2G4610 Aethionema arabicum HOM05D006434 ORTHO05D008069 1.2e-103 380.6 255 81.2
THA.LOC104823923 Tarenaya hassleriana HOM05D006434 ORTHO05D008069 1.3e-102 377.1 270 72.6
Potri.001G349800 Populus trichocarpa HOM05D006434 ORTHO05D008069 4.7e-92 342.0 276 69.6
Sabra16G0229200 Salix brachista HOM05D006434 ORTHO05D008069 1.2e-87 327.4 276 67.8
GSVIVG01032566001 Vitis vinifera HOM05D006434 ORTHO05D008069 4.5e-87 325.5 277 65.3
Manes.15G178000 Manihot esculenta HOM05D006434 ORTHO05D008069 5.0e-86 322.0 270 64.1
TWI56G0494 Tripterygium wilfordii HOM05D006434 ORTHO05D008069 8.6e-86 321.2 262 64.5
Gohir.D07G223600 Gossypium hirsutum HOM05D006434 ORTHO05D008069 1.9e-85 320.1 267 63.3
Gorai.001G257900 Gossypium raimondii HOM05D006434 ORTHO05D008069 3.3e-85 319.3 267 63.3
Gohir.A07G216800 Gossypium hirsutum HOM05D006434 ORTHO05D008069 7.3e-85 318.2 275 62.2
Eucgr.I01896 Eucalyptus grandis HOM05D006434 ORTHO05D008069 2.1e-84 316.6 290 60.3
CiPaw.03G032300 Carya illinoinensis HOM05D006434 ORTHO05D008069 4.7e-84 315.5 279 64.5
TAR629G3263 Trochodendron aralioides HOM05D006434 ORTHO05D008069 4.7e-84 315.5 269 64.3
Phvul.004G023900 Phaseolus vulgaris HOM05D006434 ORTHO05D008069 8.0e-84 314.7 282 62.4
Dinv35002 Davidia involucrata HOM05D006434 ORTHO05D008069 1.0e-83 314.3 269 63.6
Cfa007492 Carpinus fangiana HOM05D006434 ORTHO05D008069 1.4e-83 313.9 278 63.7
COL.COLO4_36989 Corchorus olitorius HOM05D006434 ORTHO05D008069 6.8e-83 311.6 271 62.0
Medtr6g009400 Medicago truncatula HOM05D006434 ORTHO05D008069 2.0e-82 310.1 271 62.7
Atru.chr8.2465 Acer truncatum HOM05D006434 ORTHO05D008069 3.4e-82 309.3 270 64.4
Ciclev10012231m.g Citrus clementina HOM05D006434 ORTHO05D008069 5.8e-82 308.5 223 71.7
Duzib264G0249 Durio zibethinus HOM05D006434 ORTHO05D008069 9.8e-82 307.8 222 68.9
QL02p079411 Quercus lobata HOM05D006434 ORTHO05D008069 1.7e-81 307.0 278 62.2
TPR.G32608 Trifolium pratense HOM05D006434 ORTHO05D008069 1.7e-81 307.0 287 58.2
AUR62018326 Chenopodium quinoa HOM05D006434 ORTHO05D008069 2.2e-81 306.6 270 60.7
Lj2g0012157 Lotus japonicus HOM05D006434 ORTHO05D008069 2.2e-81 306.6 292 58.6
Thecc.04G069300 Theobroma cacao HOM05D006434 ORTHO05D008069 2.2e-81 306.6 224 70.1
Aqoxy3G00846 Aquilegia oxysepala HOM05D006434 ORTHO05D008069 2.9e-81 306.2 240 66.7
CSS0004781 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 4.9e-81 305.4 274 61.7
Hma1.2p1_0136F.1_g062090 Hydrangea macrophylla HOM05D006434 ORTHO05D008069 4.9e-81 305.4 218 72.9
PGR142G2438 Punica granatum HOM05D006434 ORTHO05D008069 4.9e-81 305.4 263 64.6
CSS0040499 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 6.4e-81 305.1 283 60.1
Glyma.13G066900 Glycine max HOM05D006434 ORTHO05D008069 8.3e-81 304.7 279 62.0
PSO478G2838 Papaver somniferum HOM05D006434 ORTHO05D008069 8.3e-81 304.7 264 63.3
PGSC0003DMG400006900 Solanum tuberosum HOM05D006434 ORTHO05D008069 1.9e-80 303.5 253 61.3
Lalb_Chr21g0319131 Lupinus albus HOM05D006434 ORTHO05D008069 2.4e-80 303.1 276 60.1
Prupe.3G275100 Prunus persica HOM05D006434 ORTHO05D008069 7.0e-80 301.6 266 59.4
Solyc02g067540.3 Solanum lycopersicum HOM05D006434 ORTHO05D008069 7.0e-80 301.6 253 61.3
Sopen02g016670 Solanum pennellii HOM05D006434 ORTHO05D008069 7.0e-80 301.6 253 61.3
vmacro05779 Vaccinium macrocarpon HOM05D006434 ORTHO05D008069 7.0e-80 301.6 278 59.0
Nn1g08819 Nelumbo nucifera HOM05D006434 ORTHO05D008069 9.2e-80 301.2 236 64.4
Actinidia06053 Actinidia chinensis HOM05D006434 ORTHO05D008069 1.2e-79 300.8 277 59.2
PSO161G0076 Papaver somniferum HOM05D006434 ORTHO05D008069 1.2e-79 300.8 244 66.4
Sed0011674 Sechium edule HOM05D006434 ORTHO05D008069 1.2e-79 300.8 273 59.7
arahy.Tifrunner.gnm1.ann1.X2C98S Arachis hypogaea HOM05D006434 ORTHO05D008069 1.6e-79 300.4 277 60.6
CAN.G1128.11 Capsicum annuum HOM05D006434 ORTHO05D008069 1.6e-79 300.4 250 62.0
CANSAT64G2331 Cannabis sativa HOM05D006434 ORTHO05D008069 2.7e-79 299.7 257 61.9
Sc10g0004040 Simmondsia chinensis HOM05D006434 ORTHO05D008069 3.5e-79 299.3 218 70.6
VMungo0464G0451 Vigna mungo HOM05D006434 ORTHO05D008069 7.8e-79 298.1 279 60.6
arahy.Tifrunner.gnm1.ann1.ICRE53 Arachis hypogaea HOM05D006434 ORTHO05D008069 1.0e-78 297.7 276 60.5
Peaxi162Scf00059g00128 Petunia axillaris HOM05D006434 ORTHO05D008069 8.6e-78 294.7 232 64.7
RcHm_v2.0_Chr2g0169691 Rosa chinensis HOM05D006434 ORTHO05D008069 1.1e-77 294.3 273 59.3
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 1.9e-77 293.5 266 58.6
MELO3C021484.2 Cucumis melo HOM05D006434 ORTHO05D008069 2.5e-77 293.1 248 63.7
CsaV3_5G037720 Cucumis sativus L. HOM05D006434 ORTHO05D008069 3.3e-77 292.7 231 66.7
Nitab4.5_0001727g0150 Nicotiana tabacum HOM05D006434 ORTHO05D008069 3.3e-77 292.7 280 56.1
FvH4_6g49670 Fragaria vesca HOM05D006434 ORTHO05D008069 1.2e-76 290.8 270 59.6
MSTRG.23964 Avicennia marina HOM05D006434 ORTHO05D008069 2.1e-76 290.0 233 64.4
FAN02G4063 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.6e-76 289.3 230 66.1
FAN05G1688 Fragaria x ananassa HOM05D006434 ORTHO05D008069 3.6e-76 289.3 278 58.3
FAN09G0258 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.7e-76 288.9 230 66.1
FAN14G5872 Fragaria x ananassa HOM05D006434 ORTHO05D008069 4.7e-76 288.9 230 66.1
Migut.H00876 Erythranthe guttata HOM05D006434 ORTHO05D008069 6.2e-76 288.5 251 60.6
Rhsim10G0029400 Rhododendron simsii HOM05D006434 ORTHO05D008069 3.1e-75 286.2 239 64.4
SGA_v2.0_scaffold205G41750 Striga asiatica HOM05D006434 ORTHO05D008069 4.0e-75 285.8 248 62.1
unitig_744.g24344 Utricularia gibba HOM05D006434 ORTHO05D008069 5.2e-75 285.4 254 62.6
AUR62030560 Chenopodium quinoa HOM05D006434 ORTHO05D008069 1.5e-74 283.9 286 57.0
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 1.5e-74 283.9 255 62.0
MD09G1042700 Malus domestica HOM05D006434 ORTHO05D008069 1.5e-74 283.9 271 58.7
Cc07_g02850 Coffea canephora HOM05D006434 ORTHO05D008069 2.0e-74 283.5 267 58.8
Haze_14607 Corylus avellana HOM05D006434 ORTHO05D008069 4.4e-74 282.3 275 59.3
Lsat_1_v5_gn_4_180280 Lactuca sativa HOM05D006434 ORTHO05D008069 7.5e-74 281.6 282 58.9
Oeu022866.3 Olea europaea HOM05D006434 ORTHO05D008069 1.3e-73 280.8 269 57.2
ATR0665G567 Amborella trichopoda HOM05D006434 ORTHO05D008069 2.2e-73 280.0 271 56.1
Psat1g076480 Pisum sativum HOM05D006434 ORTHO05D008069 3.7e-73 279.3 227 64.3
HanXRQChr15g0488521 Helianthus annuus HOM05D006434 ORTHO05D008069 2.4e-72 276.6 219 68.0
EL10Ac2g02902 Beta vulgaris HOM05D006434 ORTHO05D008069 3.2e-72 276.2 293 53.9
CDE02G1577 Ceratophyllum demersum HOM05D006434 ORTHO05D008069 5.4e-72 275.4 254 56.3
DCAR_006717 Daucus carota HOM05D006434 ORTHO05D008069 7.0e-72 275.0 175 75.4
HPP92_023566 Vanilla planifolia HOM05D006434 ORTHO05D008069 2.3e-70 270.0 225 60.9
Nitab4.5_0003431g0070 Nicotiana tabacum HOM05D006434 ORTHO05D008069 1.2e-68 264.2 161 77.6
Cpa.g.sc14.62 Carica papaya HOM05D006434 ORTHO05D008069 1.4e-67 260.8 160 81.2
Glyma.19G017500 Glycine max HOM05D006434 ORTHO05D008069 1.2e-66 257.7 159 78.6
Os03g0736400 Oryza sativa ssp. japonica HOM05D006434 ORTHO05D008069 1.7e-65 253.8 238 57.6
CSS0001127 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 3.7e-65 252.7 187 68.4
Zm00001eb215320 Zea mays HOM05D006434 ORTHO05D008069 3.2e-64 249.6 221 59.3
Lj7A404T37 Lonicera japonica HOM05D006434 ORTHO05D008069 1.3e-62 244.2 236 55.9
CSS0033350 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 1.1e-61 241.1 185 67.0
MBI01_g13068_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 7.3e-61 238.4 217 60.4
CSS0043817 Camellia sinensis var. sinensis HOM05D006434 ORTHO05D008069 2.0e-58 230.3 144 77.1
Hund13291 Selenicereus undatus HOM05D006434 ORTHO05D008069 1.2e-55 221.1 236 54.2
Ca_04243_v3 Cicer arietinum L. HOM05D006434 ORTHO05D008069 5.1e-54 215.7 185 60.5
SalBow1G5247 Salvia bowleyana HOM05D006434 ORTHO05D008069 2.4e-51 206.8 241 49.0
SMO171G0075 Selaginella moellendorffii HOM05D006434 ORTHO05D008069 1.2e-50 204.5 175 55.4
AagrBONN_evm.TU.Sc2ySwM_344.3988 Anthoceros agrestis HOM05D006434 ORTHO05D008069 5.4e-48 195.7 160 61.2
Pp3c7_630 Physcomitrium patens HOM05D006434 ORTHO05D008069 5.4e-48 195.7 172 58.1
Mapoly0140s0031 Marchantia polymorpha HOM05D006434 ORTHO05D008069 1.0e-46 191.4 171 58.5
CBR_g31858 Chara braunii HOM05D006434 ORTHO05D008069 6.7e-38 162.2 153 53.6
Cre13.g566300 Chlamydomonas reinhardtii HOM05D006434 ORTHO05D008069 4.9e-33 146.0 180 41.1
MCO03G139 Micromonas commoda HOM05D006434 ORTHO05D008069 6.7e-30 135.6 120 55.0
PRCOL_00006620 Prasinoderma coloniale HOM05D006434 ORTHO05D008069 1.5e-29 134.4 171 39.2
Solyc01g057060.1 Solanum lycopersicum HOM05D006434 ORTHO05D008069 1.6e-28 131.0 96 67.7
Sopen01g021310 Solanum pennellii HOM05D006434 ORTHO05D008069 6.2e-28 129.0 86 75.6
SEGI_25544 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 1.8e-27 127.5 123 52.0
SEGI_38692 Sequoiadendron giganteum HOM05D006434 ORTHO05D008069 2.1e-23 114.0 84 61.9
MD17G1044100 Malus domestica HOM05D006434 ORTHO05D008069 8.7e-22 108.6 60 88.3
TAR371G0222 Trochodendron aralioides HOM05D006434 ORTHO05D008069 6.9e-19 99.0 68 76.5
Lsat_1_v5_gn_7_34121 Lactuca sativa HOM05D006434 ORTHO05D008069 4.5e-10 69.7 37 86.5
Cpa.g.sc14.61 Carica papaya HOM05D006434 ORTHO05D008069 5.9e-10 69.3 113 48.7
MBI01_g13070_MAGBIO Magnolia biondii HOM05D006434 ORTHO05D008069 1.7e-09 67.8 45 66.7


User provided reference genes

Program Settings