Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 4.1e-130 468.4 296 100.0
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 2.3e-72 276.6 224 89.3
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 3.4e-68 262.7 220 81.8
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 3.5e-65 252.7 238 77.7
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.3e-64 250.8 226 79.2
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 1.3e-64 250.8 220 83.2
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 6.7e-64 248.4 217 80.6
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 3.7e-62 242.7 238 76.1
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 2.0e-60 236.9 238 74.4
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 3.4e-60 236.1 211 82.9
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 1.8e-53 213.8 221 71.0
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 4.2e-50 202.6 219 75.8
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 6.1e-49 198.7 219 74.4
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 3.8e-43 179.5 237 68.4
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 4.1e-37 159.5 219 53.9
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 2.9e-35 153.3 218 65.1
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 4.2e-34 149.4 224 43.8
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 6.1e-33 145.6 219 42.0
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 1.4e-32 144.4 222 55.4
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 2.8e-30 136.7 222 39.2
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.7e-30 136.3 223 39.9
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 1.8e-29 134.0 218 41.3
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 4.1e-29 132.9 219 41.1
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 9.1e-29 131.7 224 44.2
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 1.3e-27 127.9 221 57.9
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 4.2e-26 122.9 222 37.8
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 1.2e-25 121.3 210 40.0
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 4.7e-25 119.4 223 49.8
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 5.2e-24 115.9 262 34.0
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 6.8e-24 115.5 226 35.4
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 9.8e-23 111.7 219 39.7
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 9.8e-23 111.7 225 36.0
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.7e-22 110.9 220 34.5
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 4.8e-22 109.4 225 39.6
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 6.3e-22 109.0 240 42.5
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 8.3e-22 108.6 227 37.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 1.4e-21 107.8 225 39.1
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 2.4e-21 107.1 221 33.9
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 3.1e-21 106.7 223 35.4
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 5.4e-21 105.9 226 34.5
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 9.1e-21 105.1 227 34.4
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 9.1e-21 105.1 225 35.1
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.6e-20 104.4 219 48.4
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 4.5e-20 102.8 145 43.4
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 4.5e-20 102.8 223 44.8
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 4.5e-20 102.8 222 44.6
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 1.0e-19 101.7 222 52.3
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 2.3e-19 100.5 221 51.6
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 2.9e-19 100.1 223 33.6
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 6.5e-19 99.0 219 33.8
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 1.5e-18 97.8 221 51.6
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.5e-18 97.8 189 58.7
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 5.5e-18 95.9 235 48.1
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 7.2e-18 95.5 227 34.4
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 1.6e-17 94.4 227 41.9
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 3.6e-17 93.2 222 46.8
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 3.0e-16 90.1 187 34.8
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 8.8e-16 88.6 223 33.2
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 4.4e-15 86.3 123 40.7
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 7.5e-15 85.5 220 37.7
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.3e-14 84.7 262 38.9
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 2.2e-14 84.0 114 43.9
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 3.7e-14 83.2 190 51.6
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 6.3e-14 82.4 220 46.8
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 6.3e-14 82.4 222 46.4
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 1.4e-13 81.3 128 53.1
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 2.4e-13 80.5 222 29.3
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 7.0e-13 79.0 233 38.2
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 3.5e-12 76.6 212 41.0
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 7.8e-12 75.5 226 41.6
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 1.3e-11 74.7 74 52.7
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 5.0e-11 72.8 212 48.1
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 1.5e-10 71.2 205 49.8
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 1.9e-10 70.9 120 40.0
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 5.6e-10 69.3 222 35.6
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 7.3e-10 68.9 112 39.3
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 1.2e-09 68.2 225 45.8
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 3.6e-09 66.6 229 28.8
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 1.8e-08 64.3 208 44.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 1.8e-08 64.3 192 39.6
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 4.0e-08 63.2 230 26.1
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 6.8e-08 62.4 124 35.5
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 8.9e-08 62.0 123 35.8
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 2.0e-07 60.8 64 50.0
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 3.4e-07 60.1 223 36.3
AT1G51430 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 9.8e-07 58.5 171 35.7
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 9.8e-07 58.5 195 40.0
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 3.7e-06 56.6 74 36.5
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 4.9e-06 56.2 190 27.9
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 4.9e-06 56.2 39 71.8


User provided reference genes

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