Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G28155 Arabidopsis thaliana HOM05D002352 ORTHO05D016619 2.7e-52 208.4 103 100.0
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 2.3e-11 72.4 93 48.4
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 3.9e-11 71.6 93 48.4
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 8.7e-11 70.5 93 47.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.5e-10 69.7 93 46.2
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.9e-10 69.3 93 45.2
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.8e-09 65.5 94 41.5
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 2.8e-09 65.5 93 43.0
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 2.8e-09 65.5 92 43.5
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 3.6e-09 65.1 93 44.1
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.6e-09 65.1 93 40.9
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.6e-09 65.1 93 40.9
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 3.6e-09 65.1 93 40.9
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 6.2e-09 64.3 94 42.6
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 6.2e-09 64.3 93 41.9
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 8.1e-09 63.9 94 41.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.1e-08 63.5 93 39.8
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.1e-08 63.5 94 42.6
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.4e-08 63.2 94 43.6
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.4e-08 63.2 93 41.9
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.8e-08 62.8 93 40.9
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.8e-08 62.8 92 44.6
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.8e-08 62.8 94 39.4
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.8e-08 62.8 94 40.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-08 62.8 94 40.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-08 62.8 94 40.4
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 2.4e-08 62.4 94 38.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.4e-08 62.4 94 40.4
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 3.1e-08 62.0 94 38.3
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 3.1e-08 62.0 94 41.5
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 4.0e-08 61.6 92 42.4
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 4.0e-08 61.6 93 39.8
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 4.0e-08 61.6 93 40.9
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.0e-08 61.6 80 46.2
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.0e-08 61.6 94 39.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 4.0e-08 61.6 94 41.5
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 5.3e-08 61.2 94 41.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.9e-08 60.8 94 40.4
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.9e-08 60.8 94 40.4
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 6.9e-08 60.8 94 39.4
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.5e-07 59.7 93 38.7
Zm00001eb214370 Zea mays HOM05D002352 ORTHO05D016619 1.5e-07 59.7 40 70.0
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-07 58.9 94 39.4
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-07 58.9 94 39.4
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-07 58.9 94 39.4
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-07 58.9 94 39.4
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.6e-07 58.9 94 39.4
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 3.4e-07 58.5 93 38.7
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.4e-07 58.5 94 41.5
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.4e-07 58.5 42 66.7
Zm00001eb083320 Zea mays HOM05D002352 ORTHO05D016619 3.4e-07 58.5 40 67.5
Zm00001eb149590 Zea mays HOM05D002352 ORTHO05D016619 3.4e-07 58.5 40 67.5
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.5e-07 58.2 94 39.4
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 4.5e-07 58.2 40 67.5
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 4.5e-07 58.2 93 37.6
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 4.5e-07 58.2 94 39.4
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 4.5e-07 58.2 40 67.5
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 4.5e-07 58.2 94 37.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 4.5e-07 58.2 94 37.2
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 4.5e-07 58.2 42 64.3
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.8e-07 57.8 53 62.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 5.8e-07 57.8 42 66.7
MD07G1271400 Malus domestica HOM05D002352 ORTHO05D016619 5.8e-07 57.8 94 39.4
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 5.8e-07 57.8 42 64.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 5.8e-07 57.8 40 70.0
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 7.6e-07 57.4 40 72.5
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 7.6e-07 57.4 94 39.4
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 7.6e-07 57.4 94 40.4
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 7.6e-07 57.4 40 67.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 9.9e-07 57.0 93 36.6
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 9.9e-07 57.0 40 65.0
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.3e-06 56.6 42 61.9
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.3e-06 56.6 93 41.9
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.3e-06 56.6 110 35.5
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.3e-06 56.6 42 64.3
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.3e-06 56.6 42 64.3
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.7e-06 56.2 94 38.3
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.7e-06 56.2 94 38.3
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.2e-06 55.8 94 38.3
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.2e-06 55.8 94 37.2
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 2.9e-06 55.5 42 59.5
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.9e-06 55.5 42 59.5
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.9e-06 55.5 42 59.5
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 2.9e-06 55.5 94 37.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 2.9e-06 55.5 98 38.8
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.9e-06 55.5 93 40.9
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 3.8e-06 55.1 94 37.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 3.8e-06 55.1 94 37.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 3.8e-06 55.1 94 37.2
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.8e-06 55.1 94 37.2
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.8e-06 55.1 94 37.2
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 4.9e-06 54.7 94 39.4
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 6.4e-06 54.3 42 61.9
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 8.4e-06 53.9 40 67.5
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 8.4e-06 53.9 94 36.2


User provided reference genes

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