Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G27900 Arabidopsis thaliana HOM05D008252 ORTHO05D011960 2.9e-140 501.9 257 100.0
AL1G50150 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 3.4e-88 328.9 248 76.6
Carub.0001s3300 Capsella rubella HOM05D008252 ORTHO05D011960 3.9e-76 288.9 247 66.8
AL1G50170 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 9.5e-75 284.3 255 67.1
AT1G35353 Arabidopsis thaliana HOM05D008252 ORTHO05D011960 4.0e-65 252.3 245 63.7
AL1G50110 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 8.4e-63 244.6 263 58.9
AL1G50190 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 3.2e-62 242.7 270 57.4
Carub.0001s3301 Capsella rubella HOM05D008252 ORTHO05D011960 4.3e-59 232.3 239 59.0
Thhalv10001856m.g Eutrema salsugineum HOM05D008252 ORTHO05D011960 1.4e-57 227.3 246 53.3
AL1G50120 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 7.1e-54 214.9 247 53.4
AL1G50210 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 6.7e-52 208.4 255 55.3
Thhalv10001845m.g Eutrema salsugineum HOM05D008252 ORTHO05D011960 1.5e-48 197.2 220 53.6
AL1G50220 Arabidopsis lyrata HOM05D008252 ORTHO05D011960 6.4e-47 191.8 247 53.0
Carub.0001s3298 Capsella rubella HOM05D008252 ORTHO05D011960 1.3e-44 184.1 248 48.8
BolC5t33176H Brassica oleracea HOM05D001339 ORTHO05D003609 3.4e-40 169.5 242 46.3
C05p44090 Brassica napus HOM05D008252 ORTHO05D011960 2.2e-39 166.8 231 47.2
AT1G34560 Arabidopsis thaliana HOM05D008252 ORTHO05D011960 1.1e-38 164.5 222 49.1
A05p29110 Brassica napus HOM05D008252 ORTHO05D011960 9.3e-38 161.4 229 46.7
C05p44520 Brassica napus HOM05D001339 ORTHO05D003609 3.0e-36 156.4 256 43.8
BraA05t21794Z Brassica rapa HOM05D008252 ORTHO05D011960 2.5e-35 153.3 229 45.9
BcaC05g28344 Brassica carinata HOM05D008252 ORTHO05D011960 5.7e-35 152.1 213 45.1
BolC5t33132H Brassica oleracea HOM05D008252 ORTHO05D011960 6.3e-34 148.7 200 49.5
AL2G10340 Arabidopsis lyrata HOM05D008252 ORTHO05D011866 3.1e-33 146.4 210 47.1
BcaC05g28373 Brassica carinata HOM05D008252 ORTHO05D011960 5.3e-33 145.6 200 48.0
CARHR292080 Cardamine hirsuta HOM05D008252 ORTHO05D011866 1.5e-32 144.1 212 44.3
Carub.0004s2077 Capsella rubella HOM05D008252 ORTHO05D011866 3.4e-32 142.9 189 48.1
AT1G35365 Arabidopsis thaliana HOM05D008252 ORTHO05D011960 1.3e-31 141.0 253 44.3
A02p43040 Brassica napus HOM05D008252 ORTHO05D011866 1.0e-28 131.3 210 45.7
Sp6g04270 Schrenkiella parvula HOM05D008252 ORTHO05D016722 1.3e-28 131.0 196 44.9
Carub.0002s0047 Capsella rubella HOM05D008252 ORTHO05D011866 6.7e-28 128.6 198 44.9
Thhalv10023974m.g Eutrema salsugineum HOM05D008252 ORTHO05D016722 7.4e-27 125.2 172 47.7
A05p28690 Brassica napus HOM05D008252 ORTHO05D011960 2.2e-26 123.6 231 41.6
BcaC03g18231 Brassica carinata HOM05D008252 ORTHO05D011866 4.1e-25 119.4 201 43.3
BolC2t12374H Brassica oleracea HOM05D008252 ORTHO05D011866 4.1e-25 119.4 201 43.3
Carub.0002s0028 Capsella rubella HOM05D008252 ORTHO05D011866 4.1e-25 119.4 167 46.1
C02p63000 Brassica napus HOM05D008252 ORTHO05D011866 9.1e-25 118.2 215 41.4
BcaB06g29196 Brassica carinata HOM05D008252 ORTHO05D016722 3.4e-24 116.3 205 40.5
BcaB07g30392 Brassica carinata HOM05D008252 ORTHO05D011866 5.9e-24 115.5 208 38.9
AL3G29480 Arabidopsis lyrata HOM05D008252 ORTHO05D011866 1.0e-23 114.8 210 39.0
BcaC03g17048 Brassica carinata HOM05D008252 ORTHO05D011866 1.7e-23 114.0 186 41.9
Carub.0001s3259 Capsella rubella HOM05D008252 ORTHO05D011960 1.7e-23 114.0 248 39.5
C02p49660 Brassica napus HOM05D008252 ORTHO05D011866 2.2e-23 113.6 186 41.9
A02p32120 Brassica napus HOM05D008252 ORTHO05D011866 1.1e-22 111.3 186 41.4
C03p26460 Brassica napus HOM05D008252 ORTHO05D011866 1.9e-22 110.5 201 38.8
Sp1g31080 Schrenkiella parvula HOM05D008252 ORTHO05D011866 1.6e-21 107.5 195 40.0
AT1G35400 Arabidopsis thaliana HOM05D008252 ORTHO05D011960 1.8e-20 104.0 226 38.5
AT1G35410 Arabidopsis thaliana HOM05D008252 ORTHO05D011960 1.8e-20 104.0 210 41.9
CARHR052650 Cardamine hirsuta HOM05D008252 ORTHO05D011866 5.1e-20 102.4 197 37.1
Thhalv10014714m.g Eutrema salsugineum HOM05D008252 ORTHO05D011866 9.7e-19 98.2 200 38.5
Thhalv10024117m.g Eutrema salsugineum HOM05D008252 ORTHO05D016722 9.7e-19 98.2 178 41.0
BolC4t28412H Brassica oleracea HOM05D008252 ORTHO05D016722 3.7e-18 96.3 204 36.8
AL3G39130 Arabidopsis lyrata HOM05D008252 ORTHO05D011866 1.8e-17 94.0 154 38.3
BcaB06g29195 Brassica carinata HOM05D008252 ORTHO05D016722 7.7e-16 88.6 181 38.1
BcaC02g07300 Brassica carinata HOM05D008252 ORTHO05D016722 7.7e-16 88.6 181 38.1
CARHR078100 Cardamine hirsuta HOM05D008252 ORTHO05D011866 8.5e-15 85.1 160 40.6
BraA02t08226Z Brassica rapa HOM05D008252 ORTHO05D011866 4.7e-13 79.3 222 32.4
BcaC03g17049 Brassica carinata HOM05D008252 ORTHO05D011866 1.0e-12 78.2 138 39.1
C02p49670 Brassica napus HOM05D008252 ORTHO05D011866 1.0e-12 78.2 138 39.1
BcaB02g09764 Brassica carinata HOM05D008252 ORTHO05D011866 1.4e-12 77.8 173 37.0
BcaB06g29193 Brassica carinata HOM05D008252 ORTHO05D016722 5.3e-09 65.9 126 37.3
BcaC02g07301 Brassica carinata HOM05D008252 ORTHO05D016722 5.3e-09 65.9 126 37.3
Sp2g00360 Schrenkiella parvula HOM05D008252 ORTHO05D011866 5.0e-07 59.3 98 37.8


User provided reference genes

Program Settings