Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G27630 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 4.1e-50 201.1 100 100.0
AL5G17050 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 1.1e-34 149.8 107 73.8
CARHR149050 Cardamine hirsuta HOM05D002383 ORTHO05D002515 6.2e-30 134.0 111 63.1
BcaB04g19442 Brassica carinata HOM05D002383 ORTHO05D002515 2.4e-29 132.1 112 63.4
BraA09t35983Z Brassica rapa HOM05D002383 ORTHO05D002515 2.0e-28 129.0 104 64.4
BolC9t53287H Brassica oleracea HOM05D002383 ORTHO05D002515 2.6e-28 128.6 112 61.6
Sp2g16760 Schrenkiella parvula HOM05D002383 ORTHO05D002515 5.8e-28 127.5 111 64.0
BcaC04g23898 Brassica carinata HOM05D002383 ORTHO05D002515 1.7e-27 125.9 112 60.7
A09p03450 Brassica napus HOM05D002383 ORTHO05D002515 1.7e-27 125.9 104 63.5
C09p03670 Brassica napus HOM05D002383 ORTHO05D002515 1.7e-27 125.9 112 60.7
Thhalv10005308m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 4.2e-26 121.3 110 59.1
Carub.0005s0607 Capsella rubella HOM05D002383 ORTHO05D002515 1.2e-25 119.8 108 66.7
BcaC06g33793 Brassica carinata HOM05D002383 ORTHO05D002515 3.5e-25 118.2 114 59.6
C07p36820 Brassica napus HOM05D002383 ORTHO05D002515 3.5e-25 118.2 114 59.6
BolC7t44195H Brassica oleracea HOM05D002383 ORTHO05D002515 3.5e-25 118.2 114 59.6
Aa31LG2G5040 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.7e-24 115.9 111 57.7
BcaC06g30972 Brassica carinata HOM05D002383 ORTHO05D002515 3.9e-24 114.8 115 58.3
Aa31LG2G5060 Aethionema arabicum HOM05D002383 ORTHO05D002515 5.1e-24 114.4 111 55.0
C04p47260 Brassica napus HOM05D002383 ORTHO05D002515 1.9e-23 112.5 107 57.9
BolC4t26325H Brassica oleracea HOM05D002383 ORTHO05D002515 1.9e-23 112.5 107 57.9
BraA04t17007Z Brassica rapa HOM05D002383 ORTHO05D002515 3.3e-23 111.7 107 57.9
CARHR261560 Cardamine hirsuta HOM05D002383 ORTHO05D002515 3.3e-23 111.7 112 56.2
A04p13490 Brassica napus HOM05D002383 ORTHO05D002515 7.3e-23 110.5 107 57.9
BcaC06g30970 Brassica carinata HOM05D002383 ORTHO05D002515 9.6e-23 110.2 115 57.4
BraA06t27021Z Brassica rapa HOM05D002383 ORTHO05D002515 1.6e-22 109.4 110 57.3
Thhalv10028250m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 2.1e-22 109.0 107 57.0
Sp7g01460 Schrenkiella parvula HOM05D002383 ORTHO05D002515 4.8e-22 107.8 107 57.0
Aa31LG9G1160 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.1e-21 106.7 107 57.9
AL7G49370 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 1.8e-21 105.9 113 54.9
AT5G40460 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 3.1e-21 105.1 113 52.2
BcaB06g27511 Brassica carinata HOM05D002383 ORTHO05D002515 3.1e-21 105.1 107 54.2
Carub.0007s3513 Capsella rubella HOM05D002383 ORTHO05D002515 9.0e-21 103.6 117 50.4
BcaB08g34622 Brassica carinata HOM05D002383 ORTHO05D002515 3.4e-20 101.7 109 55.0
THA.LOC104805371 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 1.6e-17 92.8 115 48.7
THA.LOC104825323 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 2.7e-17 92.0 103 50.5
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 4.3e-15 84.7 101 49.5
FAN05G3597 Fragaria x ananassa HOM05D002383 ORTHO05D002515 9.6e-15 83.6 104 50.0
Manes.17G112300 Manihot esculenta HOM05D002383 ORTHO05D002515 1.3e-14 83.2 101 48.5
FvH4_6g51230 Fragaria vesca HOM05D002383 ORTHO05D002515 2.8e-14 82.0 104 50.0
FAN02G4557 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.8e-14 82.0 104 50.0
FAN14G3744 Fragaria x ananassa HOM05D002383 ORTHO05D002515 2.8e-14 82.0 104 50.0
Prupe.3G291500 Prunus persica HOM05D002383 ORTHO05D002515 4.8e-14 81.3 101 47.5
RcHm_v2.0_Chr2g0172811 Rosa chinensis HOM05D002383 ORTHO05D002515 4.8e-14 81.3 105 49.5
Manes.15G150600 Manihot esculenta HOM05D002383 ORTHO05D002515 1.1e-13 80.1 102 48.0
Potri.017G070000 Populus trichocarpa HOM05D002383 ORTHO05D002515 1.1e-13 80.1 99 48.5
COL.COLO4_29113 Corchorus olitorius HOM05D002383 ORTHO05D002515 1.4e-13 79.7 100 46.0
Sabra17G0061800 Salix brachista HOM05D002383 ORTHO05D002515 1.4e-13 79.7 100 47.0
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 2.4e-13 79.0 100 48.0
TAR374G1253 Trochodendron aralioides HOM05D002383 ORTHO05D002515 3.1e-13 78.6 99 48.5
Duzib264G1049 Durio zibethinus HOM05D002383 ORTHO05D002515 4.0e-13 78.2 100 49.0
Gohir.D09G028600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 4.0e-13 78.2 101 45.5
Gorai.006G033300 Gossypium raimondii HOM05D002383 ORTHO05D002515 4.0e-13 78.2 101 45.5
MSTRG.24037 Avicennia marina HOM05D002383 ORTHO05D002515 5.3e-13 77.8 101 46.5
SalBow7G3295 Salvia bowleyana HOM05D002383 ORTHO05D002515 5.3e-13 77.8 103 50.5
TWI12G0144 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 6.9e-13 77.4 102 46.1
Duzib268G1316 Durio zibethinus HOM05D002383 ORTHO05D002515 9.0e-13 77.0 106 44.3
Thecc.04G017100 Theobroma cacao HOM05D002383 ORTHO05D002515 9.0e-13 77.0 100 45.0
Ciclev10017241m.g Citrus clementina HOM05D002383 ORTHO05D002515 1.2e-12 76.6 106 45.3
Thecc.02G258100 Theobroma cacao HOM05D002383 ORTHO05D002515 1.2e-12 76.6 103 43.7
Cpa.g.sc130.83 Carica papaya HOM05D002383 ORTHO05D002515 1.5e-12 76.3 100 46.0
Duzib251G0524 Durio zibethinus HOM05D002383 ORTHO05D002515 1.5e-12 76.3 107 42.1
Manes.12G024000 Manihot esculenta HOM05D002383 ORTHO05D002515 1.5e-12 76.3 103 40.8
Gohir.A09G029100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 2.0e-12 75.9 101 44.6
TWI56G1026 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 2.0e-12 75.9 102 45.1
Migut.K01394 Erythranthe guttata HOM05D002383 ORTHO05D002515 2.6e-12 75.5 107 43.9
TAR622G1076 Trochodendron aralioides HOM05D002383 ORTHO05D002515 4.5e-12 74.7 100 43.0
Gorai.005G179500 Gossypium raimondii HOM05D002383 ORTHO05D002515 5.8e-12 74.3 107 43.0
CSS0011711 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 7.6e-12 73.9 100 44.0
Rhsim10G0017000 Rhododendron simsii HOM05D002383 ORTHO05D002515 1.0e-11 73.6 105 47.6
Atru.chr6.2391 Acer truncatum HOM05D002383 ORTHO05D002515 1.3e-11 73.2 104 44.2
Manes.13G025600 Manihot esculenta HOM05D002383 ORTHO05D002515 1.3e-11 73.2 104 44.2
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 1.7e-11 72.8 101 44.6
Duzib187G0948 Durio zibethinus HOM05D002383 ORTHO05D002515 2.2e-11 72.4 99 43.4
TAR371G1055 Trochodendron aralioides HOM05D002383 ORTHO05D002515 2.2e-11 72.4 100 41.0
Gohir.D02G159400 Gossypium hirsutum HOM05D002383 ORTHO05D002515 2.9e-11 72.0 107 42.1
Aqoxy3G01198 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 3.8e-11 71.6 103 42.7
MD09G1027300 Malus domestica HOM05D002383 ORTHO05D002515 4.9e-11 71.2 103 42.7
Gohir.A03G136100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 6.5e-11 70.9 108 44.4
Duzib248G0824 Durio zibethinus HOM05D002383 ORTHO05D002515 1.1e-10 70.1 103 41.7
SGA_v2.0_scaffold135G34905 Striga asiatica HOM05D002383 ORTHO05D002515 1.1e-10 70.1 99 40.4
Lj2g0006785 Lotus japonicus HOM05D002383 ORTHO05D002515 1.4e-10 69.7 104 43.3
Lj4g0012935 Lotus japonicus HOM05D002383 ORTHO05D002515 1.4e-10 69.7 104 38.5
HanXRQChr15g0475321 Helianthus annuus HOM05D002383 ORTHO05D002515 1.9e-10 69.3 91 40.7
Aqoxy5G03793 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 3.2e-10 68.6 106 44.3
CiPaw.06G068500 Carya illinoinensis HOM05D002383 ORTHO05D002515 3.2e-10 68.6 105 42.9
CsaV3_5G027140 Cucumis sativus L. HOM05D002383 ORTHO05D002515 3.2e-10 68.6 98 41.8
SalBow1G3310 Salvia bowleyana HOM05D002383 ORTHO05D002515 3.2e-10 68.6 101 42.6
CiPaw.05G183200 Carya illinoinensis HOM05D002383 ORTHO05D002515 5.5e-10 67.8 106 42.5
ClCG09G019250 Citrullus lanatus HOM05D002383 ORTHO05D002515 5.5e-10 67.8 98 40.8
MELO3C021579.2 Cucumis melo HOM05D002383 ORTHO05D002515 7.1e-10 67.4 98 42.9
Gohir.A12G144600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 9.3e-10 67.0 102 39.2
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 1.2e-09 66.6 101 42.6
TAR629G2295 Trochodendron aralioides HOM05D002383 ORTHO05D002515 1.2e-09 66.6 101 37.6
A06p07510 Brassica napus HOM05D002383 ORTHO05D002515 1.6e-09 66.2 107 42.1
BraA06t23955Z Brassica rapa HOM05D002383 ORTHO05D002515 1.6e-09 66.2 107 42.1
SGA_v2.0_scaffold224G42989 Striga asiatica HOM05D002383 ORTHO05D002515 1.6e-09 66.2 99 42.4
C07p36770 Brassica napus HOM05D002383 ORTHO05D002515 2.1e-09 65.9 71 56.3
Gohir.D12G149200 Gossypium hirsutum HOM05D002383 ORTHO05D002515 2.1e-09 65.9 102 38.2
Gorai.008G160700 Gossypium raimondii HOM05D002383 ORTHO05D002515 2.1e-09 65.9 102 38.2
MD17G1027200 Malus domestica HOM05D002383 ORTHO05D002515 2.1e-09 65.9 103 41.7
CANSAT64G1350 Cannabis sativa HOM05D002383 ORTHO05D002515 2.7e-09 65.5 119 37.0
Cfa009202 Carpinus fangiana HOM05D002383 ORTHO05D002515 4.6e-09 64.7 107 41.1
COL.COLO4_24249 Corchorus olitorius HOM05D002383 ORTHO05D002515 4.6e-09 64.7 114 42.1
PGR083G1142 Punica granatum HOM05D002383 ORTHO05D002515 4.6e-09 64.7 109 42.2
Thhalv10009472m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 7.9e-09 63.9 107 42.1
THA.LOC104809580 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 7.9e-09 63.9 89 42.7
TWI75G1208 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 7.9e-09 63.9 103 41.7
BcaC05g24959 Brassica carinata HOM05D002383 ORTHO05D002515 1.3e-08 63.2 107 41.1
BolC5t29651H Brassica oleracea HOM05D002383 ORTHO05D002515 2.3e-08 62.4 107 42.1
Lalb_Chr02g0160501 Lupinus albus HOM05D002383 ORTHO05D002515 2.3e-08 62.4 105 41.9
Sed0020664 Sechium edule HOM05D002383 ORTHO05D002515 2.3e-08 62.4 102 39.2
AT1G10690 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 3.0e-08 62.0 108 42.6
MBI16_g23839_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D002515 5.1e-08 61.2 107 38.3
Aa31LG2G9800 Aethionema arabicum HOM05D002383 ORTHO05D002515 6.7e-08 60.8 102 38.2
C05p09080 Brassica napus HOM05D002383 ORTHO05D002515 6.7e-08 60.8 107 41.1
AL1G21560 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 8.7e-08 60.5 89 41.6
Haze_12239 Corylus avellana HOM05D002383 ORTHO05D002515 8.7e-08 60.5 96 39.6
Lsat_1_v5_gn_4_183900 Lactuca sativa HOM05D002383 ORTHO05D002515 8.7e-08 60.5 92 39.1
Oeu036541.1 Olea europaea HOM05D002383 ORTHO05D002515 8.7e-08 60.5 102 40.2
Psat1g054720 Pisum sativum HOM05D002383 ORTHO05D002515 1.1e-07 60.1 106 39.6
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 1.5e-07 59.7 112 37.5
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 1.5e-07 59.7 112 37.5
Oeu054622.1 Olea europaea HOM05D002383 ORTHO05D002515 1.5e-07 59.7 89 43.8
Sed0014920 Sechium edule HOM05D002383 ORTHO05D002515 1.9e-07 59.3 101 36.6
C07p36790 Brassica napus HOM05D002383 ORTHO05D002515 2.5e-07 58.9 46 67.4
Carub.0001s1018 Capsella rubella HOM05D002383 ORTHO05D002515 2.5e-07 58.9 113 39.8
Duzib147G0038 Durio zibethinus HOM05D002383 ORTHO05D002515 3.3e-07 58.5 100 40.0
Ca_04169_v3 Cicer arietinum L. HOM05D002383 ORTHO05D002515 4.3e-07 58.2 107 40.2
Lsat_1_v5_gn_0_39801 Lactuca sativa HOM05D002383 ORTHO05D002515 4.3e-07 58.2 94 39.4
Medtr6g005250 Medicago truncatula HOM05D002383 ORTHO05D002515 5.7e-07 57.8 99 38.4
THA.LOC104819379 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 5.7e-07 57.8 89 41.6
Glyma.01G026600 Glycine max HOM05D002383 ORTHO05D002515 7.4e-07 57.4 106 41.5
Lalb_Chr06g0175741 Lupinus albus HOM05D002383 ORTHO05D002515 7.4e-07 57.4 106 38.7
CARHR010870 Cardamine hirsuta HOM05D002383 ORTHO05D002515 9.6e-07 57.0 90 36.7
Lalb_Chr05g0216591 Lupinus albus HOM05D002383 ORTHO05D002515 1.6e-06 56.2 105 40.0
Nitab4.5_0003318g0160 Nicotiana tabacum HOM05D002383 ORTHO05D002515 1.6e-06 56.2 94 42.6
Eucgr.I01742 Eucalyptus grandis HOM05D002383 ORTHO05D002515 3.7e-06 55.1 108 42.6
Phvul.002G150700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 4.8e-06 54.7 107 39.3
Glyma.02G038200 Glycine max HOM05D002383 ORTHO05D002515 6.2e-06 54.3 103 38.8
HanXRQChr15g0487681 Helianthus annuus HOM05D002383 ORTHO05D002515 8.2e-06 53.9 99 38.4


User provided reference genes

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